CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCNE_0001870701
(
Toxocara canis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
TCNE_0001870701
T236839_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.669
0.250
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.669
0.250
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.669
0.250
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.669
0.250
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.669
0.250
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.669
0.250
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.669
0.250
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.669
0.250
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.669
0.250
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.661
0.227
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.661
0.227
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.661
0.227
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TCNE_0001870701-mRNA-1
Homeodomain
34
77
RRKRTNLEANQRAALDAYFEQNPHPSNDDIRSIAATLALNREVC
Links
Other
Homeodomain
family TFs
Other
Toxocara canis
TFs
1169 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00053p00216880
Amborella trichopoda
AMTR_s00053p00216880
N
0.000
Aquca_013_00218
Aquilegia coerulea
Aquca_013_00218
I
0.000
BGIOSGA004404
Oryza indica
BGIOSGA004404
I
0.000
evm.TU.supercontig_11.70
Carica papaya
evm.TU.supercontig_11.70
I
0.000
GLYMA16G03480
Glycine max
GLYMA16G03480
I
0.000
Gorai.007G103600
Gossypium raimondii
Gorai.007G103600
I
0.000
GRMZM2G111354
Zea mays
GRMZM2G111354
I
0.000
LPERR01G25700
Leersia perrieri
LPERR01G25700
I
0.000
MDP0000756254
Malus domestica
MDP0000756254
N
0.000
OB01G38850
Oryza brachyantha
OB01G38850
I
0.000
OBART01G29960
Oryza barthii
OBART01G29960
I
0.000
OGLUM01G34020
Oryza glumaepatula
OGLUM01G34020
I
0.000
OLONG_016122
Oryza longistaminata
OLONG_016122
I
0.000
OMERI01G27420
Oryza meridionalis
OMERI01G27420
I
0.000
ONIVA01G34250
Oryza nivara
ONIVA01G34250
I
0.000
OPUNC01G29800
Oryza punctata
OPUNC01G29800
I
0.000
OPUNC01G29830
Oryza punctata
OPUNC01G29830
I
0.000
ORGLA01G0245700
Oryza glaberrima
ORGLA01G0245700
I
0.000
ORUFI01G33070
Oryza rufipogon
ORUFI01G33070
I
0.000
OS01G0734000
Oryza sativa
OS01G0734000
I
0.000
Pavir.Ea02960
Panicum virgatum
Pavir.Ea02960
I
0.000
Pavir.Eb03043
Panicum virgatum
Pavir.Eb03043
I
0.000
Pm018766
Prunus mume
Pm018766
I
0.000
PRUPE_ppa024540mg
Prunus persica
PRUPE_ppa024540mg
I
0.000
Sb03g033780
Sorghum bicolor
Sb03g033780
I
0.000
Si002751m.g
Setaria italica
Si002751m.g
I
0.000
Traes_3AL_4769A72F1
Triticum aestivum
Traes_3AL_4769A72F1
N
0.000