TCNE_0001870701 (Toxocara canis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TCNE_0001870701 T236839_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.669 0.250
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.669 0.250
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.669 0.250
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.669 0.250
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.669 0.250
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.669 0.250
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.669 0.250
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.669 0.250
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.669 0.250
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.661 0.227
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.661 0.227
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.661 0.227
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TCNE_0001870701-mRNA-1 Homeodomain 34 77

Links

Other Homeodomain family TFs
Other Toxocara canis TFs

1169 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00053p00216880 Amborella trichopoda AMTR_s00053p00216880 N 0.000
Aquca_013_00218 Aquilegia coerulea Aquca_013_00218 I 0.000
BGIOSGA004404 Oryza indica BGIOSGA004404 I 0.000
evm.TU.supercontig_11.70 Carica papaya evm.TU.supercontig_11.70 I 0.000
GLYMA16G03480 Glycine max GLYMA16G03480 I 0.000
Gorai.007G103600 Gossypium raimondii Gorai.007G103600 I 0.000
GRMZM2G111354 Zea mays GRMZM2G111354 I 0.000
LPERR01G25700 Leersia perrieri LPERR01G25700 I 0.000
MDP0000756254 Malus domestica MDP0000756254 N 0.000
OB01G38850 Oryza brachyantha OB01G38850 I 0.000
OBART01G29960 Oryza barthii OBART01G29960 I 0.000
OGLUM01G34020 Oryza glumaepatula OGLUM01G34020 I 0.000
OLONG_016122 Oryza longistaminata OLONG_016122 I 0.000
OMERI01G27420 Oryza meridionalis OMERI01G27420 I 0.000
ONIVA01G34250 Oryza nivara ONIVA01G34250 I 0.000
OPUNC01G29800 Oryza punctata OPUNC01G29800 I 0.000
OPUNC01G29830 Oryza punctata OPUNC01G29830 I 0.000
ORGLA01G0245700 Oryza glaberrima ORGLA01G0245700 I 0.000
ORUFI01G33070 Oryza rufipogon ORUFI01G33070 I 0.000
OS01G0734000 Oryza sativa OS01G0734000 I 0.000
Pavir.Ea02960 Panicum virgatum Pavir.Ea02960 I 0.000
Pavir.Eb03043 Panicum virgatum Pavir.Eb03043 I 0.000
Pm018766 Prunus mume Pm018766 I 0.000
PRUPE_ppa024540mg Prunus persica PRUPE_ppa024540mg I 0.000
Sb03g033780 Sorghum bicolor Sb03g033780 I 0.000
Si002751m.g Setaria italica Si002751m.g I 0.000
Traes_3AL_4769A72F1 Triticum aestivum Traes_3AL_4769A72F1 N 0.000