Bra025608 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra025608 T239865_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.339 0.391
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.339 0.391
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.320 0.368
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025608.1-P HSF 10 105

Links

Other HSF family TFs
Other Brassica rapa TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_025_00167 Aquilegia coerulea Aquca_025_00167 I
Bo6g094990 Brassica oleracea Bo6g094990 I
Bra003969 Brassica rapa Bra003969 I
cassava4263.m1 Manihot esculenta cassava4263.m1 I
Ciclev10009011m.g Citrus clementina Ciclev10009011m.g I
Cucsa.285620 Cucumis sativus Cucsa.285620 I
Cucsa.397260 Cucumis sativus Cucsa.397260 I
F775_08891 Aegilops tauschii F775_08891 I
F775_18928 Aegilops tauschii F775_18928 I
GLYMA07G08081 Glycine max GLYMA07G08081 N
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I
GRMZM2G176568 Zea mays GRMZM2G176568 I
GSMUA_Achr9G05930_001 Musa acuminata GSMUA_Achr9G05930_001 I
Lus10010733.g Linum usitatissimum Lus10010733.g I
MDP0000136727 Malus domestica MDP0000136727 I
mgf017789m Mimulus guttatus mgf017789m I
mgf026007m Mimulus guttatus mgf026007m I
MLOC_52982 Hordeum vulgare MLOC_52982 I
MTR_1g033620 Medicago truncatula MTR_1g033620 I
OB05G25980 Oryza brachyantha OB05G25980 I
OBART04G08050 Oryza barthii OBART04G08050 I
OBART05G18640 Oryza barthii OBART05G18640 I
orange1.1g038601m.g Citrus sinensis orange1.1g038601m.g I
Pavir.Eb00103 Panicum virgatum Pavir.Eb00103 I
Pavir.J01328 Panicum virgatum Pavir.J01328 I
Pavir.J35324 Panicum virgatum Pavir.J35324 I
Pavir.J38363 Panicum virgatum Pavir.J38363 I
PDK_20s1665441g001 Phoenix dactylifera PDK_20s1665441g001 N
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I
Sb03g003150 Sorghum bicolor Sb03g003150 I
Sb09g006060 Sorghum bicolor Sb09g006060 I
Sb09g030390 Sorghum bicolor Sb09g030390 I
Si022624m.g Setaria italica Si022624m.g I
Solyc02g082380.1 Solanum lycopersicum Solyc02g082380.1 I
TRAES3BF110700030CFD_g Triticum aestivum TRAES3BF110700030CFD_g I
Traes_1AL_01E24503F Triticum aestivum Traes_1AL_01E24503F I
Traes_1AL_1360F98E7 Triticum aestivum Traes_1AL_1360F98E7 N
Traes_1BL_1B12D7856 Triticum aestivum Traes_1BL_1B12D7856 I
Traes_3AL_891566958 Triticum aestivum Traes_3AL_891566958 I
Traes_3AS_794DAF12D Triticum aestivum Traes_3AS_794DAF12D I
Traes_3DS_DF23FE973 Triticum aestivum Traes_3DS_DF23FE973 I
TRIUR3_09932 Triticum urartu TRIUR3_09932 I
TRIUR3_18966 Triticum urartu TRIUR3_18966 I
VIT_04s0008g00900 Vitis vinifera VIT_04s0008g00900 I
VIT_09s0002g03540 Vitis vinifera VIT_09s0002g03540 I
VIT_09s0002g03610 Vitis vinifera VIT_09s0002g03610 I