Carubv10021131m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10021131m.g T243064_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.355 0.432
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.354 0.386
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.354 0.386
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.354 0.364
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.339 0.330
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.339 0.330
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.331 0.364
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.331 0.364
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.329 0.375
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.329 0.375
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021131m HSF 12 104

Links

Other HSF family TFs
Other Capsella rubella TFs

707 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004806 Ailuropoda melanoleuca ENSAMEG00000004806 N
ENSBTAG00000000943 Bos taurus ENSBTAG00000000943 N
ENSBTAP00000001247-D1 Bos grunniens ENSBTAP00000001247-D1 N
ENSCAFG00000031764 Canis familiaris ENSCAFG00000031764 N
ENSCJAG00000004366 Callithrix jacchus ENSCJAG00000004366 N
ENSCPOG00000012429 Cavia porcellus ENSCPOG00000012429 N
ENSCSAG00000008839 Chlorocebus sabaeus ENSCSAG00000008839 N
ENSDNOG00000047188 Dasypus novemcinctus ENSDNOG00000047188 N
ENSDORG00000003193 Dipodomys ordii ENSDORG00000003193 N
ENSECAG00000002943 Equus caballus ENSECAG00000002943 N
ENSETEG00000005043 Echinops telfairi ENSETEG00000005043 N
ENSFCAG00000029151 Felis catus ENSFCAG00000029151 N
ENSGGOG00000022789 Gorilla gorilla ENSGGOG00000022789 N
ENSLAFG00000016102 Loxodonta africana ENSLAFG00000016102 N
ENSMLUG00000015932 Myotis lucifugus ENSMLUG00000015932 N
ENSMMUG00000002354 Macaca mulatta ENSMMUG00000002354 N
ENSMMUP00000003150 Macaca fascicularis ENSMMUP00000003150 N
ENSMPUG00000010104 Mustela putorius furo ENSMPUG00000010104 N
ENSNLEG00000014652 Nomascus leucogenys ENSNLEG00000014652 N
ENSOARG00000016792 Ovis aries ENSOARG00000016792 N
ENSOGAG00000005719 Otolemur garnettii ENSOGAG00000005719 N
ENSOPRG00000013892 Ochotona princeps ENSOPRG00000013892 N
ENSPANG00000023728 Papio anubis ENSPANG00000023728 N
ENSPPYG00000029913 Pongo abelii ENSPPYG00000029913 N
ENSPVAG00000015636 Pteropus vampyrus ENSPVAG00000015636 N
ENSSSCG00000018029 Sus scrofa ENSSSCG00000018029 N
ENSSTOG00000024669 Ictidomys tridecemlineatus ENSSTOG00000024669 N
ENSTSYG00000002897 Tarsius syrichta ENSTSYG00000002897 N
ENSTTRG00000017194 Tursiops truncatus ENSTTRG00000017194 N
ENSVPAG00000012293 Vicugna pacos ENSVPAG00000012293 N
Zfp286 Mus musculus ENSMUSG00000047342 N
Zfp286a Rattus norvegicus ENSRNOG00000003218 N
ZNF286A Pan troglodytes ENSPTRG00000008803 N
ZNF286A Homo sapiens ENSG00000187607 N