ENSLACG00000007228 (Latimeria chalumnae)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLACG00000007228 T244133_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.790 0.790
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.790 0.790
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.790 0.790
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.790 0.790
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.790 0.790
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.790 0.790
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.790 0.790
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.790 0.790
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.790 0.790
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.790 0.790
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.790 0.790
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.790 0.790
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.790 0.790
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.752 0.752
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.752 0.752
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.752 0.752
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.752 0.752
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.752 0.752
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.752 0.752
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.752 0.752
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.752 0.752
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.752 0.752
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000008165 IRF 9 114

Links

Other IRF family TFs
Other Latimeria chalumnae TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R014038 Calypte anna Aan_R014038 I
ACYPI003006 Acyrthosiphon pisum ACYPI003006 I
Afo_R007145 Aptenodytes forsteri Afo_R007145 I
AGAP010201 Anopheles gambiae AGAP010201 I
Alligator_sinensis_CCG004455.1 Alligator sinensis Alligator_sinensis_CCG004455.1 I
BGIBMGA010353 Bombyx mori BGIBMGA010353 I
CapteG45346 Capitella teleta CapteG45346 I
CGI_10026909 Crassostrea gigas CGI_10026909 I
Cmyd_10017689 Chelonia mydas Cmyd_10017689 I
crp Drosophila melanogaster FBgn0001994 D
ENSAMEG00000002016 Ailuropoda melanoleuca ENSAMEG00000002016 I
ENSAPLG00000013446 Anas platyrhynchos ENSAPLG00000013446 I
ENSCING00000014406 Ciona intestinalis ENSCING00000014406 I
ENSCSAG00000009620 Chlorocebus sabaeus ENSCSAG00000009620 I
ENSCSAVG00000000333 Ciona savignyi ENSCSAVG00000000333 I
ENSFALG00000004331 Ficedula albicollis ENSFALG00000004331 I
ENSGALG00000027823 Gallus gallus ENSGALG00000027823 I
ENSGMOG00000014930 Gadus morhua ENSGMOG00000014930 I
ENSGMOG00000015232 Gadus morhua ENSGMOG00000015232 I
ENSLACG00000000328 Latimeria chalumnae ENSLACG00000000328 I
ENSLOCG00000002626 Lepisosteus oculatus ENSLOCG00000002626 I
ENSMEUG00000000888 Macropus eugenii ENSMEUG00000000888 I
ENSMPUG00000015023 Mustela putorius furo ENSMPUG00000015023 I
ENSNLEG00000009797 Nomascus leucogenys ENSNLEG00000009797 I
ENSOARG00000003120 Ovis aries ENSOARG00000003120 I
ENSONIG00000005196 Oreochromis niloticus ENSONIG00000005196 I
ENSONIG00000016338 Oreochromis niloticus ENSONIG00000016338 I
ENSOPRG00000001061 Ochotona princeps ENSOPRG00000001061 I
ENSP00000204517 Macaca fascicularis ENSP00000204517 I
ENSP00000204517-D1 Bos grunniens ENSP00000204517-D1 I
ENSPANG00000010499 Papio anubis ENSPANG00000010499 I
ENSPFOG00000000836 Poecilia formosa ENSPFOG00000000836 I
ENSPFOG00000011355 Poecilia formosa ENSPFOG00000011355 I
ENSPPYG00000007054 Pongo abelii ENSPPYG00000007054 I
ENSPSIG00000009002 Pelodiscus sinensis ENSPSIG00000009002 I
ENSPVAG00000005418 Pteropus vampyrus ENSPVAG00000005418 I
ENSSTOG00000028040 Ictidomys tridecemlineatus ENSSTOG00000028040 I
ENSXMAG00000004632 Xiphophorus maculatus ENSXMAG00000004632 I
ENSXMAG00000011968 Xiphophorus maculatus ENSXMAG00000011968 I
estExt_fgenesh2_pg.C_3260041 Branchiostoma floridae estExt_fgenesh2_pg.C_3260041 I
fgenesh2_pg.scaffold_326000054 Branchiostoma floridae fgenesh2_pg.scaffold_326000054 I
GA20511 Drosophila pseudoobscura FBgn0080505 I
GB48999 Apis mellifera GB48999 I
GD21926 Drosophila simulans FBgn0193342 I
GE19372 Drosophila yakuba FBgn0236717 I
GF21721 Drosophila ananassae FBgn0098721 I
GG24179 Drosophila erecta FBgn0116312 I
GH10096 Drosophila grimshawi FBgn0117577 I
GI14377 Drosophila mojavensis FBgn0137129 I
GJ16254 Drosophila virilis FBgn0203439 I
GK24289 Drosophila willistoni FBgn0226250 I
GL14101 Drosophila persimilis FBgn0151706 I
GM17917 Drosophila sechellia FBgn0172824 I
HMEL008759 Heliconius melpomene HMEL008759 I
KGM_15765 Danaus plexippus KGM_15765 I
L798_07621 Zootermopsis nevadensis L798_07621 I
LLOJ009485 Lutzomyia longipalpis LLOJ009485 I
MDOA012071 Musca domestica MDOA012071 I
Myotis_brandtii_TFAP4_10028039 Myotis brandtii Myotis_brandtii_TFAP4_10028039 I
Ogr05167 Ophisaurus gracilis Ogr05167 I
Pvit_18996 Pogona vitticeps Pvit_18996 I
Sakowv30040946m.g Saccoglossus kowalevskii Sakowv30040946m.g I
SPU_003179 Strongylocentrotus purpuratus SPU_003179 I
TCLT_0000678201 Thelazia callipaeda TCLT_0000678201 I
tetur30g00270 Tetranychus urticae tetur30g00270 I
TFAP4 Anolis carolinensis ENSACAG00000016352 I
TFAP4 Bos taurus ENSBTAG00000033174 I
TFAP4 Canis familiaris ENSCAFG00000019231 I
TFAP4 Callithrix jacchus ENSCJAG00000019756 I
TFAP4 Cavia porcellus ENSCPOG00000004174 I
tfap4 Danio rerio ENSDARG00000103923 I
TFAP4 Dasypus novemcinctus ENSDNOG00000039193 I
Tfap4 Dipodomys ordii ENSDORG00000004656 I
TFAP4 Equus caballus ENSECAG00000022311 I
TFAP4 Erinaceus europaeus ENSEEUG00000006004 I
TFAP4 Echinops telfairi ENSETEG00000008634 I
TFAP4 Felis catus ENSFCAG00000011227 I
TFAP4 Homo sapiens ENSG00000090447 D
tfap4 Gasterosteus aculeatus ENSGACG00000011329 I
tfap4 Gasterosteus aculeatus ENSGACG00000018768 I
TFAP4 Gorilla gorilla ENSGGOG00000000451 I
TFAP4 Loxodonta africana ENSLAFG00000022341 I
TFAP4 Meleagris gallopavo ENSMGAG00000009411 I
TFAP4 Myotis lucifugus ENSMLUG00000005725 I
TFAP4 Monodelphis domestica ENSMODG00000016377 I
Tfap4 Mus musculus ENSMUSG00000005718 D
TFAP4 Ornithorhynchus anatinus ENSOANG00000019858 I
TFAP4 Oryctolagus cuniculus ENSOCUG00000024550 I
TFAP4 Otolemur garnettii ENSOGAG00000008955 I
tfap4 Oryzias latipes ENSORLG00000008286 I
tfap4 Oryzias latipes ENSORLG00000015050 I
TFAP4 Procavia capensis ENSPCAG00000011134 I
TFAP4 Pan troglodytes ENSPTRG00000007713 I
Tfap4 Rattus norvegicus ENSRNOG00000005227 I
TFAP4 Tupaia belangeri ENSTBEG00000014089 I
tfap4 Tetraodon nigroviridis ENSTNIG00000002015 I
tfap4 Tetraodon nigroviridis ENSTNIG00000009740 I
tfap4 Tetraodon nigroviridis ENSTNIG00000014095 I
tfap4 Takifugu rubripes ENSTRUG00000006111 I
tfap4 Takifugu rubripes ENSTRUG00000013344 I
TFAP4 Tursiops truncatus ENSTTRG00000002710 I
TFAP4 Vicugna pacos ENSVPAG00000008001 I
tfap4 Xenopus tropicalis XB-GENE-999265 I