irf4b (Tetraodon nigroviridis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSTNIG00000008222 T244420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.943 0.943
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.943 0.943
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.943 0.943
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.943 0.943
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.943 0.943
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.943 0.943
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.943 0.943
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.943 0.943
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.943 0.943
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.943 0.943
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.943 0.943
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.933 0.933
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.933 0.933
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.790 0.790
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.790 0.790
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.790 0.790
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.790 0.790
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.790 0.790
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.790 0.790
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.790 0.790
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.790 0.790
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.790 0.790
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.790 0.790
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011052 IRF 24 129

Links

Other IRF family TFs
Other Tetraodon nigroviridis TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL002359 Aedes aegypti AAEL002359 I 0.000
AARA001117 Anopheles arabiensis AARA001117 I 0.000
ACHR009241 Anopheles christyi ACHR009241 I 0.000
ACYPI000169 Acyrthosiphon pisum ACYPI000169 I 0.000
AEPI005805 Anopheles epiroticus AEPI005805 I 0.000
AGAP000061 Anopheles gambiae AGAP000061 I 0.000
AMEC018792 Anopheles melas AMEC018792 I 0.000
AMEM014370 Anopheles merus AMEM014370 I 0.000
ANCCEY_12232 Ancylostoma ceylanicum ANCCEY_12232 N 0.000
ANCDUO_06286 Ancylostoma duodenale ANCDUO_06286 I 0.000
ASIM_0001287801 Anisakis simplex ASIM_0001287801 I 0.000
ASU_08868 Ascaris suum ASU_08868 I 0.000
ASU_11536 Ascaris suum ASU_11536 I 0.000
A_00240 Schistosoma haematobium A_00240 I 0.000
Bm3512 Brugia malayi Bm3512 I 0.000
BTMF_0001011301 Brugia timori BTMF_0001011301 I 0.000
BXY_1717400 Bursaphelenchus xylophilus BXY_1717400 I 0.000
CapteG52697 Capitella teleta CapteG52697 I 0.000
CBG05700 Caenorhabditis briggsae CBG05700 I 0.000
CBG11192 Caenorhabditis briggsae CBG11192 I 0.000
CBN23227 Caenorhabditis brenneri CBN23227 I 0.000
ceh-38 Caenorhabditis elegans WBGene00000459 I 0.000
CJA03729 Caenorhabditis japonica CJA03729 I 0.000
CPIJ006386 Culex quinquefasciatus CPIJ006386 I 0.000
CpipJ_CPIJ006386 Culex pipiens CpipJ_CPIJ006386 I 0.000
CRE26474 Caenorhabditis remanei CRE26474 I 0.000
csin107314 Clonorchis sinensis csin107314 I 0.000
csin111721 Clonorchis sinensis csin111721 I 0.000
D915_15034 Fasciola hepatica D915_15034 I 0.000
DAPPUDRAFT_32500 Daphnia pulex DAPPUDRAFT_32500 I 0.000
DICVIV_04514 Dictyocaulus viviparus DICVIV_04514 I 0.000
DICVIV_06959 Dictyocaulus viviparus DICVIV_06959 I 0.000
DME_0000092301 Dracunculus medinensis DME_0000092301 I 0.000
ECANG7_03124 Echinococcus canadensis ECANG7_03124 I 0.000
EEL_0000016301 Elaeophora elaphi EEL_0000016301 I 0.000
EVEC_0000332701 Enterobius vermicularis EVEC_0000332701 I 0.000
GA15133 Drosophila pseudoobscura FBgn0075158 I 0.000
GE14509 Drosophila yakuba FBgn0232113 I 0.000
GG16442 Drosophila erecta FBgn0108673 I 0.000
GH24019 Drosophila grimshawi FBgn0131475 I 0.000
GI14052 Drosophila mojavensis FBgn0136806 I 0.000
GJ19930 Drosophila virilis FBgn0207072 I 0.000
GK13692 Drosophila willistoni FBgn0215700 I 0.000
GL18146 Drosophila persimilis FBgn0155749 I 0.000
GM26776 Drosophila sechellia FBgn0181629 I 0.000
GPLIN_001052100 Globodera pallida GPLIN_001052100 I 0.000
HCOI00211900 Haemonchus contortus HCOI00211900 I 0.000
HCOI01108700 Haemonchus contortus HCOI01108700 I 0.000
HCOI01220000 Haemonchus contortus HCOI01220000 I 0.000
HMEL003746 Heliconius melpomene HMEL003746 I 0.000
KGM_19875 Danaus plexippus KGM_19875 I 0.000
L596_g14922 Steinernema carpocapsae L596_g14922 I 0.000
L596_g1964 Steinernema carpocapsae L596_g1964 I 0.000
L889_g23716 Steinernema feltiae L889_g23716 I 0.000
L889_g27415 Steinernema feltiae L889_g27415 I 0.000
L892_g29126 Steinernema scapterisci L892_g29126 N 0.000
L893_g20975 Steinernema glaseri L893_g20975 I 0.000
L893_g27707 Steinernema glaseri L893_g27707 I 0.000
L898_g12845 Steinernema monticolum L898_g12845 I 0.000
L898_g28854 Steinernema monticolum L898_g28854 I 0.000
LOAG_18692 Loa loa LOAG_18692 I 0.000
LotgiG199735 Lottia gigantea LotgiG199735 I 0.000
MhA1_Contig512.frz3.fgene1 Meloidogyne hapla MhA1_Contig512.frz3.fgene1 I 0.000
Minc16757 Meloidogyne incognita Minc16757 I 0.000
nAv.1.0.1.g09678 Acanthocheilonema viteae nAv.1.0.1.g09678 I 0.000
nDi.2.2.2.g00186 Dirofilaria immitis nDi.2.2.2.g00186 I 0.000
NECAME_06517 Necator americanus NECAME_06517 N 0.000
nLs.2.1.2.g01435 Litomosoides sigmodontis nLs.2.1.2.g01435 I 0.000
nOo.2.0.1.g10331 Onchocerca ochengi nOo.2.0.1.g10331 I 0.000
nRc.2.0.1.g02844 Romanomermis culicivorax nRc.2.0.1.g02844 N 0.000
onecut Drosophila melanogaster FBgn0028996 D 0.000
ONECUT1 Erinaceus europaeus ENSEEUG00000010121 I 0.000
onecut1.2 Xenopus tropicalis XB-GENE-1021674 I 0.000
PPAI010631 Phlebotomus papatasi PPAI010631 I 0.000
PXEA_0000259701 Protopolystoma xenopodis PXEA_0000259701 I 0.000
RSKR_0000243000 Rhabditophanes kr3021 RSKR_0000243000 N 0.000
RSKR_0000794200 Rhabditophanes kr3021 RSKR_0000794200 N 0.000
scaffold421-EXSNAP2012.16 Pristionchus exspectatus scaffold421-EXSNAP2012.16 I 0.000
SCUD_0001643701 Schistosoma curassoni SCUD_0001643701 I 0.000
Sjc_0006770 Schistosoma japonicum Sjc_0006770 I 0.000
Smp_013070 Schistosoma mansoni Smp_013070 I 0.000
Smp_196950 Schistosoma mansoni Smp_196950 I 0.000
SMRZ_0000163501 Schistosoma margrebowiei SMRZ_0000163501 I 0.000
SMTD_0000015201 Schistosoma mattheei SMTD_0000015201 I 0.000
SMU15040257 Schmidtea mediterranea SMU15040257 I 0.000
SMUV_0000999101 Syphacia muris SMUV_0000999101 I 0.000
SROB_0000769301 Schistosoma rodhaini SROB_0000769301 I 0.000
T265_00751 Opisthorchis viverrini T265_00751 I 0.000
T265_01147 Opisthorchis viverrini T265_01147 I 0.000
TASK_0000698901 Taenia asiatica TASK_0000698901 I 0.000
TCLT_0000532001 Thelazia callipaeda TCLT_0000532001 I 0.000
TCLT_0000779601 Thelazia callipaeda TCLT_0000779601 I 0.000
TMUE_s0014009100 Trichuris muris TMUE_s0014009100 I 0.000
TsM_001008400 Taenia solium TsM_001008400 I 0.000
TTRE_0000086601 Trichuris trichiura TTRE_0000086601 I 0.000
WBGene00247461 Onchocerca volvulus WBGene00247461 I 0.000
WUBG_00613 Wuchereria bancrofti WUBG_00613 N 0.000