Bra025294 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra025294 T245067_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.808 0.808
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025294.1-P LOB 12 110

Links

Other LOB family TFs
Other Brassica rapa TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH99024 Xenopus laevis AAH99024 I
AALB002625 Anopheles albimanus AALB002625 I
Aan_R008835 Calypte anna Aan_R008835 I
Aan_R012005 Calypte anna Aan_R012005 I
AARA006848 Anopheles arabiensis AARA006848 I
ACOM042234 Anopheles coluzzii ACOM042234 I
ACUA020556 Anopheles culicifacies ACUA020556 I
ACYPI005934 Acyrthosiphon pisum ACYPI005934 I
ADAC008563 Anopheles darlingi ADAC008563 I
ADIR003190 Anopheles dirus ADIR003190 I
AEPI005174 Anopheles epiroticus AEPI005174 I
AFAF008350 Anopheles farauti AFAF008350 I
Afo_R013811 Aptenodytes forsteri Afo_R013811 I
Afo_R015816 Aptenodytes forsteri Afo_R015816 I
AFUN009463 Anopheles funestus AFUN009463 I
Alligator_sinensis_CCG010580.1 Alligator sinensis Alligator_sinensis_CCG010580.1 I
Alligator_sinensis_CCG016145.1 Alligator sinensis Alligator_sinensis_CCG016145.1 I
Alligator_sinensis_CCG016691.1 Alligator sinensis Alligator_sinensis_CCG016691.1 I
AMEC013916 Anopheles melas AMEC013916 I
AMEC022423 Anopheles melas AMEC022423 I
AMEM008174 Anopheles merus AMEM008174 I
AMIN000644 Anopheles minimus AMIN000644 I
AQUA008924 Anopheles quadriannulatus AQUA008924 I
ASIM_0001060801 Anisakis simplex ASIM_0001060801 I
ASIS007484 Anopheles sinensis ASIS007484 I
ASTEI00398 Anopheles stephensi ASTEI00398 I
ASU_13270 Ascaris suum ASU_13270 I
BGIBMGA006183 Bombyx mori BGIBMGA006183 I
BGLB000113 Biomphalaria glabrata BGLB000113 I
BGLB004656 Biomphalaria glabrata BGLB004656 I
BGLB010204 Biomphalaria glabrata BGLB010204 I
Bm2922 Brugia malayi Bm2922 I
Bm3989 Brugia malayi Bm3989 I
Brh_R002712 Buceros rhinoceros Brh_R002712 I
Brh_R013160 Buceros rhinoceros Brh_R013160 I
CapteG113501 Capitella teleta CapteG113501 I
CGI_10004075 Crassostrea gigas CGI_10004075 I
CLEC005164 Cimex lectularius CLEC005164 I
Cmyd_10001855 Chelonia mydas Cmyd_10001855 I
Cmyd_10011171 Chelonia mydas Cmyd_10011171 I
Cmyd_10017152 Chelonia mydas Cmyd_10017152 I
CPIJ016024 Culex quinquefasciatus CPIJ016024 I
CpipJ_CPIJ016024 Culex pipiens CpipJ_CPIJ016024 I
D917_02601 Trichinella nativa D917_02601 I
D918_09037 Trichuris suis D918_09037 I
DAPPUDRAFT_219609 Daphnia pulex DAPPUDRAFT_219609 I
EFV55278 Trichinella spiralis EFV55278 I
EFV60819 Trichinella spiralis EFV60819 I
ENSACAG00000028739 Anolis carolinensis ENSACAG00000028739 I
ENSAMEG00000000689 Ailuropoda melanoleuca ENSAMEG00000000689 I
ENSAMEG00000001719 Ailuropoda melanoleuca ENSAMEG00000001719 I
ENSAMEG00000002266 Ailuropoda melanoleuca ENSAMEG00000002266 I
ENSAMEG00000006616 Ailuropoda melanoleuca ENSAMEG00000006616 I
ENSAMXG00000005397 Astyanax mexicanus ENSAMXG00000005397 I
ENSAMXG00000006849 Astyanax mexicanus ENSAMXG00000006849 I
ENSAMXG00000007750 Astyanax mexicanus ENSAMXG00000007750 I
ENSAMXG00000010341 Astyanax mexicanus ENSAMXG00000010341 I
ENSAMXG00000013864 Astyanax mexicanus ENSAMXG00000013864 I
ENSAMXG00000014433 Astyanax mexicanus ENSAMXG00000014433 I
ENSAMXG00000019720 Astyanax mexicanus ENSAMXG00000019720 I
ENSAPLG00000004831 Anas platyrhynchos ENSAPLG00000004831 I
ENSAPLG00000013150 Anas platyrhynchos ENSAPLG00000013150 I
ENSBTAP00000023319-D1 Bos grunniens ENSBTAP00000023319-D1 I
ENSBTAP00000023729-D1 Bos grunniens ENSBTAP00000023729-D1 I
ENSCING00000001836 Ciona intestinalis ENSCING00000001836 I
ENSCSAG00000009510 Chlorocebus sabaeus ENSCSAG00000009510 I
ENSCSAG00000010739 Chlorocebus sabaeus ENSCSAG00000010739 I
ENSCSAG00000015590 Chlorocebus sabaeus ENSCSAG00000015590 I
ENSCSAVG00000007831 Ciona savignyi ENSCSAVG00000007831 I
ENSFALG00000001645 Ficedula albicollis ENSFALG00000001645 I
ENSFALG00000007912 Ficedula albicollis ENSFALG00000007912 I
ENSGALG00000002626 Gallus gallus ENSGALG00000002626 I
ENSGMOG00000008225 Gadus morhua ENSGMOG00000008225 I
ENSGMOG00000014502 Gadus morhua ENSGMOG00000014502 I
ENSGMOG00000018023 Gadus morhua ENSGMOG00000018023 I
ENSLACG00000006999 Latimeria chalumnae ENSLACG00000006999 I
ENSLACG00000013662 Latimeria chalumnae ENSLACG00000013662 I
ENSLACG00000018765 Latimeria chalumnae ENSLACG00000018765 I
ENSLOCG00000001325 Lepisosteus oculatus ENSLOCG00000001325 I
ENSLOCG00000004579 Lepisosteus oculatus ENSLOCG00000004579 I
ENSMEUG00000013000 Macropus eugenii ENSMEUG00000013000 I
ENSMEUG00000013948 Macropus eugenii ENSMEUG00000013948 I
ENSMPUG00000002273 Mustela putorius furo ENSMPUG00000002273 I
ENSMPUG00000003549 Mustela putorius furo ENSMPUG00000003549 I
ENSMPUG00000003794 Mustela putorius furo ENSMPUG00000003794 I
ENSMPUG00000007335 Mustela putorius furo ENSMPUG00000007335 I
ENSMPUG00000012176 Mustela putorius furo ENSMPUG00000012176 I
ENSNLEG00000006809 Nomascus leucogenys ENSNLEG00000006809 I
ENSNLEG00000008722 Nomascus leucogenys ENSNLEG00000008722 I
ENSNLEG00000014680 Nomascus leucogenys ENSNLEG00000014680 I
ENSOARG00000008766 Ovis aries ENSOARG00000008766 I
ENSOARG00000011401 Ovis aries ENSOARG00000011401 I
ENSOARG00000011785 Ovis aries ENSOARG00000011785 I
ENSONIG00000002143 Oreochromis niloticus ENSONIG00000002143 I
ENSONIG00000002873 Oreochromis niloticus ENSONIG00000002873 I
ENSONIG00000013076 Oreochromis niloticus ENSONIG00000013076 I
ENSONIG00000020007 Oreochromis niloticus ENSONIG00000020007 I
ENSP00000352900 Macaca fascicularis ENSP00000352900 I
ENSP00000352900-D1 Bos grunniens ENSP00000352900-D1 I
ENSP00000363817-D1 Bos grunniens ENSP00000363817-D1 I
ENSP00000393870 Macaca fascicularis ENSP00000393870 I
ENSP00000419692 Macaca fascicularis ENSP00000419692 I
ENSPANG00000008314 Papio anubis ENSPANG00000008314 I
ENSPANG00000018527 Papio anubis ENSPANG00000018527 I
ENSPANG00000026102 Papio anubis ENSPANG00000026102 I
ENSPFOG00000006042 Poecilia formosa ENSPFOG00000006042 I
ENSPFOG00000010127 Poecilia formosa ENSPFOG00000010127 I
ENSPFOG00000011556 Poecilia formosa ENSPFOG00000011556 I
ENSPFOG00000018110 Poecilia formosa ENSPFOG00000018110 I
ENSPFOG00000018113 Poecilia formosa ENSPFOG00000018113 I
ENSPFOG00000018435 Poecilia formosa ENSPFOG00000018435 I
ENSPPYG00000000571 Pongo abelii ENSPPYG00000000571 I
ENSPPYG00000017239 Pongo abelii ENSPPYG00000017239 I
ENSPPYG00000019748 Pongo abelii ENSPPYG00000019748 I
ENSPSIG00000004871 Pelodiscus sinensis ENSPSIG00000004871 I
ENSPSIG00000005889 Pelodiscus sinensis ENSPSIG00000005889 I
ENSPSIG00000011977 Pelodiscus sinensis ENSPSIG00000011977 I
ENSPSIG00000018221 Pelodiscus sinensis ENSPSIG00000018221 I
ENSSHAG00000006089 Sarcophilus harrisii ENSSHAG00000006089 I
ENSSHAG00000010830 Sarcophilus harrisii ENSSHAG00000010830 I
ENSSHAG00000015367 Sarcophilus harrisii ENSSHAG00000015367 I
ENSSHAG00000015645 Sarcophilus harrisii ENSSHAG00000015645 I
ENSSTOG00000010239 Ictidomys tridecemlineatus ENSSTOG00000010239 I
ENSSTOG00000019649 Ictidomys tridecemlineatus ENSSTOG00000019649 I
ENSSTOG00000027099 Ictidomys tridecemlineatus ENSSTOG00000027099 I
ENSSTOG00000028427 Ictidomys tridecemlineatus ENSSTOG00000028427 I
ENSTNIG00000003828 Tetraodon nigroviridis ENSTNIG00000003828 I
ENSTRUG00000007882 Takifugu rubripes ENSTRUG00000007882 I
ENSTSYG00000002120 Tarsius syrichta ENSTSYG00000002120 I
ENSXMAG00000001735 Xiphophorus maculatus ENSXMAG00000001735 I
ENSXMAG00000011834 Xiphophorus maculatus ENSXMAG00000011834 I
ENSXMAG00000014275 Xiphophorus maculatus ENSXMAG00000014275 I
ENSXMAG00000015121 Xiphophorus maculatus ENSXMAG00000015121 I
ENSXMAG00000018259 Xiphophorus maculatus ENSXMAG00000018259 I
e_gw.333.24.1 Branchiostoma floridae e_gw.333.24.1 I
fgenesh2_pg.scaffold_12000186 Branchiostoma floridae fgenesh2_pg.scaffold_12000186 I
GA18146 Drosophila pseudoobscura FBgn0078154 I
GB42692 Apis mellifera GB42692 I
GE16988 Drosophila yakuba FBgn0234474 I
GF21986 Drosophila ananassae FBgn0098985 I
Gfo_R007966 Geospiza fortis Gfo_R007966 I
Gfo_R012403 Geospiza fortis Gfo_R012403 I
GG12659 Drosophila erecta FBgn0104947 I
GH24408 Drosophila grimshawi FBgn0131864 I
GI15428 Drosophila mojavensis FBgn0138177 I
GJ16389 Drosophila virilis FBgn0203573 I
GK25746 Drosophila willistoni FBgn0227705 I
GL15129 Drosophila persimilis FBgn0152733 I
GM18927 Drosophila sechellia FBgn0173830 I
GPUH_0001303601 Gongylonema pulchrum GPUH_0001303601 I
gw.322.85.1 Branchiostoma floridae gw.322.85.1 I
HelroG62045 Helobdella robusta HelroG62045 I
HHAL002788-PA Halyomorpha halys HHAL002788-PA I
HMEL005004 Heliconius melpomene HMEL005004 I
ISCW005340 Ixodes scapularis ISCW005340 I
KGM_05745 Danaus plexippus KGM_05745 I
L798_09225 Zootermopsis nevadensis L798_09225 I
LCUP004818 Lucilia cuprina LCUP004818 I
LLOJ005938 Lutzomyia longipalpis LLOJ005938 I
LotgiG162352 Lottia gigantea LotgiG162352 I
LotgiG68173 Lottia gigantea LotgiG68173 I
MCINX011950 Melitaea cinxia MCINX011950 I
MDOA006432 Musca domestica MDOA006432 I
MESCA000610 Megaselia scalaris MESCA000610 I
Myotis_brandtii_RXRB_10004245 Myotis brandtii Myotis_brandtii_RXRB_10004245 I
Myotis_brandtii_RXRG_10024336 Myotis brandtii Myotis_brandtii_RXRG_10024336 I
nAv.1.0.1.g10279 Acanthocheilonema viteae nAv.1.0.1.g10279 I
nDi.2.2.2.g04010 Dirofilaria immitis nDi.2.2.2.g04010 I
nLs.2.1.2.g01997 Litomosoides sigmodontis nLs.2.1.2.g01997 I
NR2C1 Canis familiaris ENSCAFG00000006244 I
Nr2c1 Dipodomys ordii ENSDORG00000004257 I
NR2C1 Felis catus ENSFCAG00000026108 I
NR2F1 Anolis carolinensis ENSACAG00000013324 I
Nr2f6 Mus musculus ENSMUSG00000002393 D
NR4A1 Microcebus murinus ENSMICG00000016812 I
NR4A1 Otolemur garnettii ENSOGAG00000006323 I
nRc.2.0.1.g17592 Romanomermis culicivorax nRc.2.0.1.g17592 I
NV15186 Nasonia vitripennis NV15186 I
Ocbimv22005201m.g Octopus bimaculoides Ocbimv22005201m.g I
Ocbimv22005391m.g Octopus bimaculoides Ocbimv22005391m.g I
Ogr07161 Ophisaurus gracilis Ogr07161 I
PPARA Ornithorhynchus anatinus ENSOANG00000006277 I
PPARA Tupaia belangeri ENSTBEG00000017305 I
PPARD Bos taurus ENSBTAG00000017542 I
PPARD Canis familiaris ENSCAFG00000001310 I
PPARD Cavia porcellus ENSCPOG00000011385 I
PPARD Felis catus ENSFCAG00000025234 I
PPARD Monodelphis domestica ENSMODG00000013778 I
Ppard Mus musculus ENSMUSG00000002250 I
PPARD Ochotona princeps ENSOPRG00000015187 I
Ppard Rattus norvegicus ENSRNOG00000000503 I
PPARD Sus scrofa ENSSSCG00000001539 I
PPARD Tursiops truncatus ENSTTRG00000009416 I
ppardb Danio rerio ENSDARG00000009473 I
PTRK_0000861500 Parastrongyloides trichosuri PTRK_0000861500 I
Pvit_05051 Pogona vitticeps Pvit_05051 I
Pvit_14285 Pogona vitticeps Pvit_14285 I
RPRC013330 Rhodnius prolixus RPRC013330 I
RSKR_0000337300 Rhabditophanes kr3021 RSKR_0000337300 I
RXRA Anolis carolinensis ENSACAG00000007923 I
RXRA Bos taurus ENSBTAG00000017851 I
RXRA Canis familiaris ENSCAFG00000019838 I
RXRA Callithrix jacchus ENSCJAG00000010148 I
RXRA Cavia porcellus ENSCPOG00000000168 I
RXRA Dasypus novemcinctus ENSDNOG00000044228 I
Rxra Dipodomys ordii ENSDORG00000009780 I
RXRA Equus caballus ENSECAG00000019365 I
RXRA Erinaceus europaeus ENSEEUG00000000887 I
RXRA Felis catus ENSFCAG00000002431 I
RXRA Homo sapiens ENSG00000186350 D
RXRA Gorilla gorilla ENSGGOG00000009752 I
RXRA Loxodonta africana ENSLAFG00000012239 I
RXRA Meleagris gallopavo ENSMGAG00000006819 I
RXRA Microcebus murinus ENSMICG00000010833 I
RXRA Myotis lucifugus ENSMLUG00000010476 I
RXRA Macaca mulatta ENSMMUG00000008183 I
RXRA Monodelphis domestica ENSMODG00000013136 I
Rxra Mus musculus ENSMUSG00000015846 D
RXRA Ornithorhynchus anatinus ENSOANG00000003910 I
RXRA Otolemur garnettii ENSOGAG00000010970 I
RXRA Ochotona princeps ENSOPRG00000003883 I
RXRA Pan troglodytes ENSPTRG00000021527 I
Rxra Rattus norvegicus ENSRNOG00000009446 I
RXRA Taeniopygia guttata ENSTGUG00000005800 I
rxra Xenopus tropicalis XB-GENE-478718 I
rxraa Danio rerio ENSDARG00000057737 I
rxraa Gasterosteus aculeatus ENSGACG00000018189 I
rxraa Oryzias latipes ENSORLG00000012155 I
rxraa Tetraodon nigroviridis ENSTNIG00000006350 I
rxraa Takifugu rubripes ENSTRUG00000006349 I
rxrab Danio rerio ENSDARG00000035127 I
RXRB Bos taurus ENSBTAG00000000602 I
RXRB Canis familiaris ENSCAFG00000000912 I
RXRB Callithrix jacchus ENSCJAG00000021619 I
RXRB Cavia porcellus ENSCPOG00000013936 I
RXRB Dasypus novemcinctus ENSDNOG00000015431 I
Rxrb Dipodomys ordii ENSDORG00000013816 I
RXRB Equus caballus ENSECAG00000023041 I
RXRB Echinops telfairi ENSETEG00000006663 I
RXRB Felis catus ENSFCAG00000006981 I
RXRB Homo sapiens ENSG00000204231 D
RXRB Gorilla gorilla ENSGGOG00000009823 I
RXRB Loxodonta africana ENSLAFG00000002141 I
RXRB Microcebus murinus ENSMICG00000000899 I
RXRB Myotis lucifugus ENSMLUG00000014163 I
RXRB Macaca mulatta ENSMMUG00000003858 I
RXRB Monodelphis domestica ENSMODG00000014249 I
Rxrb Mus musculus ENSMUSG00000039656 D
RXRB Oryctolagus cuniculus ENSOCUG00000011590 I
RXRB Otolemur garnettii ENSOGAG00000011689 I
RXRB Ochotona princeps ENSOPRG00000000905 I
RXRB Pan troglodytes ENSPTRG00000018034 I
Rxrb Rattus norvegicus ENSRNOG00000000464 I
RXRB Sus scrofa ENSSSCG00000001474 I
RXRB Tupaia belangeri ENSTBEG00000015312 I
RXRB Tursiops truncatus ENSTTRG00000004291 I
rxrb Xenopus tropicalis XB-GENE-480167 I
rxrb.L Xenopus laevis XB-GENE-6254669 I
rxrb.S Xenopus laevis XB-GENE-865350 I
rxrba Danio rerio ENSDARG00000078954 I
rxrba Gasterosteus aculeatus ENSGACG00000000096 I
rxrba Oryzias latipes ENSORLG00000006476 I
rxrba Tetraodon nigroviridis ENSTNIG00000018176 I
rxrba Takifugu rubripes ENSTRUG00000008509 I
rxrbb Danio rerio ENSDARG00000002006 I
rxrbb Gasterosteus aculeatus ENSGACG00000007982 I
rxrbb Oryzias latipes ENSORLG00000007020 I
rxrbb Tetraodon nigroviridis ENSTNIG00000018446 I
rxrbb Takifugu rubripes ENSTRUG00000015903 I
RXRG Bos taurus ENSBTAG00000016801 I
RXRG Canis familiaris ENSCAFG00000013336 I
RXRG Choloepus hoffmanni ENSCHOG00000009952 I
RXRG Callithrix jacchus ENSCJAG00000004656 I
RXRG Cavia porcellus ENSCPOG00000015343 I
RXRG Dasypus novemcinctus ENSDNOG00000037217 I
Rxrg Dipodomys ordii ENSDORG00000014034 I
RXRG Equus caballus ENSECAG00000024377 I
RXRG Felis catus ENSFCAG00000010759 I
RXRG Homo sapiens ENSG00000143171 D
RXRG Gorilla gorilla ENSGGOG00000003983 I
RXRG Loxodonta africana ENSLAFG00000008059 I
RXRG Meleagris gallopavo ENSMGAG00000003715 I
RXRG Microcebus murinus ENSMICG00000009970 I
RXRG Macaca mulatta ENSMMUG00000002892 I
RXRG Monodelphis domestica ENSMODG00000001291 I
Rxrg Mus musculus ENSMUSG00000015843 D
RXRG Oryctolagus cuniculus ENSOCUG00000005512 I
RXRG Otolemur garnettii ENSOGAG00000011318 I
RXRG Ochotona princeps ENSOPRG00000014490 I
RXRG Pan troglodytes ENSPTRG00000023788 I
RXRG Pteropus vampyrus ENSPVAG00000007457 I
Rxrg Rattus norvegicus ENSRNOG00000004537 I
RXRG Sus scrofa ENSSSCG00000006328 I
RXRG Tupaia belangeri ENSTBEG00000002797 I
RXRG Taeniopygia guttata ENSTGUG00000017315 I
RXRG Tursiops truncatus ENSTTRG00000003653 I
RXRG Vicugna pacos ENSVPAG00000004578 I
rxrg Xenopus tropicalis XB-GENE-478493 I
rxrg.L Xenopus laevis XB-GENE-865184 I
rxrgb Danio rerio ENSDARG00000004697 I
rxrgb Gasterosteus aculeatus ENSGACG00000011685 I
rxrgb Oryzias latipes ENSORLG00000016690 I
rxrgb Takifugu rubripes ENSTRUG00000006878 I
Sakowv30025796m.g Saccoglossus kowalevskii Sakowv30025796m.g I
Sjc_0002350 Schistosoma japonicum Sjc_0002350 I
SMAR001127 Strigamia maritima SMAR001127 I
Smp_073470 Schistosoma mansoni Smp_073470 I
SMUV_0000987101 Syphacia muris SMUV_0000987101 I
SNAPOd2T00027824001 Oikopleura dioica SNAPOd2T00027824001 I
Tal_R003918 Tyto alba Tal_R003918 I
Tal_R010183 Tyto alba Tal_R010183 I
TC014027 Tribolium castaneum TC014027 I
TCLT_0000544201 Thelazia callipaeda TCLT_0000544201 I
tetur01g09240 Tetranychus urticae tetur01g09240 I
tetur31g01930 Tetranychus urticae tetur31g01930 I
TMUE_s0156001400 Trichuris muris TMUE_s0156001400 I
USP Aedes aegypti AAEL000395 I
USP Anopheles gambiae AGAP002095 I
usp Drosophila melanogaster FBgn0003964 D
WBGene00239244 Onchocerca volvulus WBGene00239244 I
YQE_09004 Dendroctonus ponderosae YQE_09004 I