cassava11118.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava11118.m1 T246433_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.737 0.737
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11118.m1 LOB 5 103

Links

Other LOB family TFs
Other Manihot esculenta TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_042290 Acremonium chrysogenum ACRE_042290 N
BAUCODRAFT_119725 Baudoinia compniacensis BAUCODRAFT_119725 I
BBA_00362 Beauveria bassiana BBA_00362 N
Bcin01g06300 Botrytis cinerea Bcin01g06300 I
BGHDH14_bgh02178 Blumeria graminis BGHDH14_bgh02178 I
CFIO01_12884 Colletotrichum fioriniae CFIO01_12884 I
CGGC5_6423 Colletotrichum gloeosporioides CGGC5_6423 I
CH063_10875 Colletotrichum higginsianum CH063_10875 I
CHGG_05934 Chaetomium globosum CHGG_05934 I
Cob_08038 Colletotrichum orbiculare Cob_08038 I
COCC4DRAFT_62452 Bipolaris maydis COCC4DRAFT_62452 I
COCCADRAFT_21472 Bipolaris zeicola COCCADRAFT_21472 I
COCMIDRAFT_23818 Bipolaris oryzae COCMIDRAFT_23818 I
COCSADRAFT_276273 Bipolaris sorokiniana COCSADRAFT_276273 I
COCVIDRAFT_38721 Bipolaris victoriae COCVIDRAFT_38721 I
CPUR_06219 Claviceps purpurea CPUR_06219 N
CSUB01_11791 Colletotrichum sublineola CSUB01_11791 I
DOTSEDRAFT_74982 Dothistroma septosporum DOTSEDRAFT_74982 I
estExt_fgenesh1_pg.C_50728 Cryphonectria parasitica estExt_fgenesh1_pg.C_50728 I
estExt_Genewise1Plus.C_100794 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_100794 I
estExt_Genewise1Plus.C_380118 Mycosphaerella fijiensis estExt_Genewise1Plus.C_380118 I
F503_02611 Ophiostoma piceae uamh F503_02611 I
FFUJ_01228 Fusarium fujikuroi FFUJ_01228 N
GGTG_01991 Gaeumannomyces graminis GGTG_01991 I
GLRG_04444 Colletotrichum graminicola GLRG_04444 I
GMDG_04728 Pseudogymnoascus destructans GMDG_04728 I
LEMA_P095280.1 Leptosphaeria maculans LEMA_P095280.1 I
M437DRAFT_14468 Aureobasidium melanogenum M437DRAFT_14468 I
M438DRAFT_31288 Aureobasidium pullulans M438DRAFT_31288 I
MAPG_06349 Magnaporthe poae MAPG_06349 I
MBM_02592 Marssonina brunnea MBM_02592 I
MGG_04729 Magnaporthe oryzae MGG_04729 I
MGU_04950 Metarhizium guizhouense MGU_04950 N
MYCFIDRAFT_60981 Pseudocercospora fijiensis MYCFIDRAFT_60981 I
MYCTH_77476 Myceliophthora thermophila MYCTH_77476 I
OCS_04756 Ophiocordyceps sinensis OCS_04756 N
OIDMADRAFT_117495 Oidiodendron maius OIDMADRAFT_117495 I
PFICI_02022 Pestalotiopsis fici PFICI_02022 I
PTT_18239 Pyrenophora teres PTT_18239 I
PV10_06256 Exophiala mesophila PV10_06256 I
SAPIO_CDS3166 Scedosporium apiospermum SAPIO_CDS3166 I
SBOR_1325 Sclerotinia borealis SBOR_1325 I
SEPMUDRAFT_52418 Sphaerulina musiva SEPMUDRAFT_52418 I
SETTUDRAFT_103803 Setosphaeria turcica SETTUDRAFT_103803 I
THITE_2112431 Thielavia terrestris THITE_2112431 I
TRIREDRAFT_56863 Trichoderma reesei TRIREDRAFT_56863 N
TRIVIDRAFT_173229 Trichoderma virens TRIVIDRAFT_173229 N
UCREL1_7924 Eutypa lata UCREL1_7924 I
UCRPA7_6713 Togninia minima UCRPA7_6713 I
V499_08165 Pseudogymnoascus pannorum V499_08165 I
VHEMI04007 Torrubiella hemipterigena VHEMI04007 N
X797_003701 Metarhizium robertsii X797_003701 N