Bostr.0556s0333 (Boechera stricta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Bostr.0556s0333 T246660_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.939 0.939
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0556s0333.1.p LOB 5 103

Links

Other LOB family TFs
Other Boechera stricta TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R006000 Aptenodytes forsteri Afo_R006000 I
Brh_R010409 Buceros rhinoceros Brh_R010409 I
Cmyd_10020724 Chelonia mydas Cmyd_10020724 I
ENSAMEG00000002077 Ailuropoda melanoleuca ENSAMEG00000002077 I
ENSAMXG00000002922 Astyanax mexicanus ENSAMXG00000002922 I
ENSAPLG00000010379 Anas platyrhynchos ENSAPLG00000010379 I
ENSCHOG00000005539 Choloepus hoffmanni ENSCHOG00000005539 I
ENSCHOG00000007628 Choloepus hoffmanni ENSCHOG00000007628 I
ENSCHOG00000009417 Choloepus hoffmanni ENSCHOG00000009417 I
ENSDNOG00000000774 Dasypus novemcinctus ENSDNOG00000000774 I
ENSGGOG00000023767 Gorilla gorilla ENSGGOG00000023767 I
ENSGMOG00000010245 Gadus morhua ENSGMOG00000010245 I
ENSMEUG00000011765 Macropus eugenii ENSMEUG00000011765 I
ENSMLUG00000000564 Myotis lucifugus ENSMLUG00000000564 I
ENSMMUG00000013164 Macaca mulatta ENSMMUG00000013164 I
ENSMMUG00000022399 Macaca mulatta ENSMMUG00000022399 I
ENSMMUP00000040972 Macaca fascicularis ENSMMUP00000040972 I
ENSOARG00000012702 Ovis aries ENSOARG00000012702 I
ENSOGAG00000024748 Otolemur garnettii ENSOGAG00000024748 N
ENSONIG00000011168 Oreochromis niloticus ENSONIG00000011168 I
ENSP00000260045 Macaca fascicularis ENSP00000260045 I
ENSP00000260045-D1 Bos grunniens ENSP00000260045-D1 I
ENSPCAG00000008407 Procavia capensis ENSPCAG00000008407 I
ENSTSYG00000001778 Tarsius syrichta ENSTSYG00000001778 I
ENSTTRG00000012793 Tursiops truncatus ENSTTRG00000012793 I
Gfo_R003337 Geospiza fortis Gfo_R003337 I
prkrirb Danio rerio ENSDARG00000020964 D
prkrirb Tetraodon nigroviridis ENSTNIG00000003292 D
prkrirb Takifugu rubripes ENSTRUG00000007070 I
prkrirb Gasterosteus aculeatus ENSGACG00000010435 I
Pvit_02386 Pogona vitticeps Pvit_02386 I
Tal_R010930 Tyto alba Tal_R010930 I
thap12 Xenopus tropicalis XB-GENE-6073216 I
THAP12 Tursiops truncatus ENSTTRG00000013287 I
THAP12 Taeniopygia guttata ENSTGUG00000013565 I
THAP12 Pan troglodytes ENSPTRG00000004091 I
THAP12 Ornithorhynchus anatinus ENSOANG00000000831 I
THAP12 Monodelphis domestica ENSMODG00000005315 I
THAP12 Meleagris gallopavo ENSMGAG00000015267 I
THAP12 Gallus gallus ENSGALG00000000838 D
THAP12 Felis catus ENSFCAG00000006764 I
THAP12 Erinaceus europaeus ENSEEUG00000003060 I
THAP12 Equus caballus ENSECAG00000021982 I
THAP12 Bos taurus ENSBTAG00000031609 I