Eucgr.B03456 (Eucalyptus grandis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Eucgr.B03456 T250658_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.969 0.743
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.966 0.716
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.963 0.757
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.952 0.716
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.948 0.703
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.945 0.514
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.943 0.757
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.943 0.541
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.943 0.541
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.943 0.541
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.937 0.514
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.934 0.662
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.934 0.662
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.934 0.662
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.897 0.486
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.866 0.405
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03456.1 MADF 109 194

Links

Other MADF family TFs
Other Eucalyptus grandis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001853 Calypte anna Aan_R001853 N
Afo_R001906 Aptenodytes forsteri Afo_R001906 N
ATOH8 Sus scrofa ENSSSCG00000008230 N
ATOH8 Monodelphis domestica ENSMODG00000004038 N
ATOH8 Myotis lucifugus ENSMLUG00000011394 N
ATOH8 Microcebus murinus ENSMICG00000007934 N
Atoh8 Mus musculus ENSMUSG00000037621 N
ATOH8 Oryctolagus cuniculus ENSOCUG00000003528 N
ATOH8 Loxodonta africana ENSLAFG00000027790 N
ATOH8 Otolemur garnettii ENSOGAG00000025987 N
ATOH8 Procavia capensis ENSPCAG00000015209 N
ATOH8 Pteropus vampyrus ENSPVAG00000001652 N
Atoh8 Rattus norvegicus ENSRNOG00000010716 N
ATOH8 Homo sapiens ENSG00000168874 N
ATOH8 Felis catus ENSFCAG00000022157 N
ATOH8 Dasypus novemcinctus ENSDNOG00000047321 N
atoh8 Danio rerio ENSDARG00000037555 N
ATOH8 Cavia porcellus ENSCPOG00000006364 N
ATOH8 Callithrix jacchus ENSCJAG00000019571 N
atoh8 Xenopus tropicalis XB-GENE-877027 N
ATOH8 Bos taurus ENSBTAG00000024000 N
BGLB001926 Biomphalaria glabrata BGLB001926 N
Brh_R001590 Buceros rhinoceros Brh_R001590 N
CGI_10011834 Crassostrea gigas CGI_10011834 N
ENSACAG00000006693 Anolis carolinensis ENSACAG00000006693 N
ENSAMEG00000005787 Ailuropoda melanoleuca ENSAMEG00000005787 N
ENSBTAP00000032978-D1 Bos grunniens ENSBTAP00000032978-D1 N
ENSCAFG00000007657 Canis familiaris ENSCAFG00000007657 N
ENSCSAG00000016234 Chlorocebus sabaeus ENSCSAG00000016234 N
ENSDORG00000009998 Dipodomys ordii ENSDORG00000009998 N
ENSECAG00000015799 Equus caballus ENSECAG00000015799 N
ENSFALG00000014873 Ficedula albicollis ENSFALG00000014873 N
ENSGACG00000019554 Gasterosteus aculeatus ENSGACG00000019554 N
ENSGGOG00000023858 Gorilla gorilla ENSGGOG00000023858 N
ENSGMOG00000015329 Gadus morhua ENSGMOG00000015329 N
ENSLACG00000006436 Latimeria chalumnae ENSLACG00000006436 N
ENSLOCG00000010919 Lepisosteus oculatus ENSLOCG00000010919 N
ENSMGAG00000013108 Meleagris gallopavo ENSMGAG00000013108 N
ENSMMUG00000019558 Macaca mulatta ENSMMUG00000019558 N
ENSMPUG00000009121 Mustela putorius furo ENSMPUG00000009121 N
ENSOPRG00000010781 Ochotona princeps ENSOPRG00000010781 N
ENSP00000366553 Macaca fascicularis ENSP00000366553 N
ENSPANG00000020858 Papio anubis ENSPANG00000020858 N
ENSPFOG00000014589 Poecilia formosa ENSPFOG00000014589 N
ENSPPYG00000012219 Pongo abelii ENSPPYG00000012219 N
ENSPSIG00000000802 Pelodiscus sinensis ENSPSIG00000000802 N
ENSSTOG00000006538 Ictidomys tridecemlineatus ENSSTOG00000006538 N
ENSTBEG00000008003 Tupaia belangeri ENSTBEG00000008003 N
ENSTGUG00000010695 Taeniopygia guttata ENSTGUG00000010695 N
ENSTNIG00000000721 Tetraodon nigroviridis ENSTNIG00000000721 N
ENSTRUG00000000986 Takifugu rubripes ENSTRUG00000000986 N
ENSXMAG00000019079 Xiphophorus maculatus ENSXMAG00000019079 N
fgenesh2_pg.scaffold_9000228 Branchiostoma floridae fgenesh2_pg.scaffold_9000228 N
fgenesh2_pg.scaffold_9000241 Branchiostoma floridae fgenesh2_pg.scaffold_9000241 N
Gfo_R002078 Geospiza fortis Gfo_R002078 N
ISCW011969 Ixodes scapularis ISCW011969 N
LotgiG99796 Lottia gigantea LotgiG99796 N
Myotis_brandtii_Atoh8_10004590 Myotis brandtii Myotis_brandtii_Atoh8_10004590 N
Ocbimv22003818m.g Octopus bimaculoides Ocbimv22003818m.g N
Ogr18256 Ophisaurus gracilis Ogr18256 N
Pvit_12640 Pogona vitticeps Pvit_12640 N
Sakowv30034602m.g Saccoglossus kowalevskii Sakowv30034602m.g N
SMAR005703 Strigamia maritima SMAR005703 N
Tal_R001182 Tyto alba Tal_R001182 N
TCNE_0000163301 Toxocara canis TCNE_0000163301 N