PK04914.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK04914.1 T251167_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK04914.1
M01262_2.00		 Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.951 0.811
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.951 0.811
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.951 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01262_2.00 MADF 2 83

DNA Binding Domains

Protein ID Domain From To Sequence
PK04914.1 MADF 203 284

Links

Other MADF family TFs
Other Cannabis sativa TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA015201 Oryza indica BGIOSGA015201 N
GRMZM2G126194 Zea mays GRMZM2G126194 N
LPERR04G06900 Leersia perrieri LPERR04G06900 N
OBART04G10380 Oryza barthii OBART04G10380 N
OMERI04G09500 Oryza meridionalis OMERI04G09500 N
ONIVA04G08240 Oryza nivara ONIVA04G08240 N
OPUNC04G08500 Oryza punctata OPUNC04G08500 N
ORGLA02G0343600 Oryza glaberrima ORGLA02G0343600 N
ORGLA04G0074500 Oryza glaberrima ORGLA04G0074500 N
ORUFI04G11550 Oryza rufipogon ORUFI04G11550 N
OS04G0386900 Oryza sativa OS04G0386900 N
Pavir.J18471 Panicum virgatum Pavir.J18471 N
Si012575m.g Setaria italica Si012575m.g N