CpipJ_CPIJ008335 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008335 T252703_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.788 0.788
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.788 0.788
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.758 0.758
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.758 0.758
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.758 0.758
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.758 0.758
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.758 0.758
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.758 0.758
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.758 0.758
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.758 0.758
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.758 0.758
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.758 0.758
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.758 0.758
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.758 0.758
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.758 0.758
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.758 0.758
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.758 0.758
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.758 0.758
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.758 0.758
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.758 0.758
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.758 0.758
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.758 0.758
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.758 0.758
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.758 0.758
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.758 0.758
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008335-RA MADS box 44 76

Links

Other MADS box family TFs
Other Culex pipiens TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_080110 Acremonium chrysogenum ACRE_080110 I 0.000
BBA_00844 Beauveria bassiana BBA_00844 I 0.000
Bcin02g03240 Botrytis cinerea Bcin02g03240 I 0.000
BGHDH14_bgh06583 Blumeria graminis BGHDH14_bgh06583 I 0.000
CCM_05618 Cordyceps militaris CCM_05618 I 0.000
CFIO01_02423 Colletotrichum fioriniae CFIO01_02423 I 0.000
CH063_08904 Colletotrichum higginsianum CH063_08904 I 0.000
CHGG_02493 Chaetomium globosum CHGG_02493 I 0.000
CMQ_6262 Grosmannia clavigera CMQ_6262 I 0.000
Cob_03179 Colletotrichum orbiculare Cob_03179 I 0.000
CPUR_06716 Claviceps purpurea CPUR_06716 I 0.000
CSUB01_04857 Colletotrichum sublineola CSUB01_04857 I 0.000
estExt_fgenesh2_pg.C_10626 Neurospora discreta estExt_fgenesh2_pg.C_10626 I 0.000
estExt_Genewise1Plus.C_sca_6_chr9_2_00224 Nectria haematococca estExt_Genewise1Plus.C_sca_6_chr9_2_00224 I 0.000
F503_08286 Ophiostoma piceae uamh F503_08286 I 0.000
FFUJ_02554 Fusarium fujikuroi FFUJ_02554 I 0.000
FGRRES_07368 Fusarium graminearum FGRRES_07368 I 0.000
FOXG_01519 Fusarium oxysporum FOXG_01519 I 0.000
FOXG_16654 Fusarium oxysporum FOXG_16654 I 0.000
FOXG_16719 Fusarium oxysporum FOXG_16719 I 0.000
FPSE_04183 Fusarium pseudograminearum FPSE_04183 I 0.000
FVEG_07882 Fusarium verticillioides FVEG_07882 I 0.000
GGTG_00491 Gaeumannomyces graminis GGTG_00491 I 0.000
GLRG_03014 Colletotrichum graminicola GLRG_03014 I 0.000
GMDG_03522 Pseudogymnoascus destructans GMDG_03522 I 0.000
HMPREF1624_00394 Sporothrix schenckii HMPREF1624_00394 I 0.000
MAJ_01995 Metarhizium majus MAJ_01995 I 0.000
MAM_07515 Metarhizium album MAM_07515 I 0.000
MANI_016433 Metarhizium anisopliae MANI_016433 I 0.000
MBM_08507 Marssonina brunnea MBM_08507 I 0.000
MBR_03822 Metarhizium brunneum MBR_03822 I 0.000
MGG_08185 Magnaporthe oryzae MGG_08185 I 0.000
MYCTH_2300984 Myceliophthora thermophila MYCTH_2300984 I 0.000
NCU01386 Neurospora crassa NCU01386 D 0.000
NechaG71721 Fusarium solani NechaG71721 I 0.000
NEUTE1DRAFT_119830 Neurospora tetrasperma NEUTE1DRAFT_119830 I 0.000
OCS_04243 Ophiocordyceps sinensis OCS_04243 I 0.000
OIDMADRAFT_165781 Oidiodendron maius OIDMADRAFT_165781 I 0.000
PFICI_07768 Pestalotiopsis fici PFICI_07768 I 0.000
S40285_07444 Stachybotrys chlorohalonata S40285_07444 I 0.000
S40288_01221 Stachybotrys chartarum S40288_01221 I 0.000
SBOR_3407 Sclerotinia borealis SBOR_3407 I 0.000
SMAC_08362 Sordaria macrospora SMAC_08362 I 0.000
SPBR_06705 Sporothrix brasiliensis SPBR_06705 I 0.000
SS1G_01733 Sclerotinia sclerotiorum SS1G_01733 I 0.000
TRIATDRAFT_53110 Trichoderma atroviride TRIATDRAFT_53110 I 0.000
TRIVIDRAFT_33856 Trichoderma virens TRIVIDRAFT_33856 N 0.000
UV8b_2421 Ustilaginoidea virens UV8b_2421 I 0.000
V499_06325 Pseudogymnoascus pannorum V499_06325 I 0.000
VDAG_08406 Verticillium dahliae VDAG_08406 I 0.000
VHEMI01378 Torrubiella hemipterigena VHEMI01378 I 0.000
X797_006189 Metarhizium robertsii X797_006189 I 0.000
X797_010922 Metarhizium robertsii X797_010922 I 0.000
X797_011329 Metarhizium robertsii X797_011329 I 0.000
X797_012204 Metarhizium robertsii X797_012204 I 0.000