AGL56 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G60880 T252853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G60880.1 MADS box 12 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CORT_0C03980 Candida orthopsilosis CORT_0C03980 N
CPAG_00585 Candida parapsilosis CPAG_00585 N
CTRG_02481 Candida tropicalis CTRG_02481 N
DEHA2G13574g Debaryomyces hansenii DEHA2G13574g N
estExt_fgenesh1_pg.C_80373 Cryphonectria parasitica estExt_fgenesh1_pg.C_80373 N
estExt_fgenesh1_pg.C_chr_1.20163 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20163 N
PICST_66618 Scheffersomyces stipitis PICST_66618 N