AGL21 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT4G37940 T252898_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.875 0.875
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.875 0.875
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.833 0.833
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.750 0.750
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G37940.1 MADS box 10 57
AT4G37940.3 MADS box 10 57
AT4G37940.4 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

785 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PMAA_095820 Talaromyces marneffei PMAA_095820 N 0.000
PMAA_095820 Penicillium marneffei PMAA_095820 N 0.000
TSTA_000600 Talaromyces stipitatus TSTA_000600 N 0.000
TSTA_002980 Talaromyces stipitatus TSTA_002980 N 0.000
TSTA_003830 Talaromyces stipitatus TSTA_003830 N 0.000
TSTA_008370 Talaromyces stipitatus TSTA_008370 N 0.000
TSTA_008380 Talaromyces stipitatus TSTA_008380 N 0.000
TSTA_009440 Talaromyces stipitatus TSTA_009440 N 0.000
TSTA_009900 Talaromyces stipitatus TSTA_009900 N 0.000
TSTA_013450 Talaromyces stipitatus TSTA_013450 N 0.000
TSTA_020700 Talaromyces stipitatus TSTA_020700 N 0.000
TSTA_022990 Talaromyces stipitatus TSTA_022990 N 0.000
TSTA_024630 Talaromyces stipitatus TSTA_024630 N 0.000
TSTA_025810 Talaromyces stipitatus TSTA_025810 N 0.000
TSTA_029420 Talaromyces stipitatus TSTA_029420 N 0.000
TSTA_035660 Talaromyces stipitatus TSTA_035660 N 0.000
TSTA_035730 Talaromyces stipitatus TSTA_035730 N 0.000
TSTA_050400 Talaromyces stipitatus TSTA_050400 N 0.000
TSTA_050560 Talaromyces stipitatus TSTA_050560 N 0.000
TSTA_052640 Talaromyces stipitatus TSTA_052640 N 0.000
TSTA_055970 Talaromyces stipitatus TSTA_055970 N 0.000
TSTA_059810 Talaromyces stipitatus TSTA_059810 N 0.000
TSTA_069180 Talaromyces stipitatus TSTA_069180 N 0.000
TSTA_080510 Talaromyces stipitatus TSTA_080510 N 0.000
TSTA_080940 Talaromyces stipitatus TSTA_080940 N 0.000
TSTA_086330 Talaromyces stipitatus TSTA_086330 N 0.000
TSTA_093940 Talaromyces stipitatus TSTA_093940 N 0.000
TSTA_096630 Talaromyces stipitatus TSTA_096630 N 0.000
TSTA_097820 Talaromyces stipitatus TSTA_097820 N 0.000
TSTA_097920 Talaromyces stipitatus TSTA_097920 N 0.000
TSTA_098060 Talaromyces stipitatus TSTA_098060 N 0.000
TSTA_098800 Talaromyces stipitatus TSTA_098800 N 0.000
TSTA_103240 Talaromyces stipitatus TSTA_103240 N 0.000
TSTA_106120 Talaromyces stipitatus TSTA_106120 N 0.000
TSTA_107220 Talaromyces stipitatus TSTA_107220 N 0.000
TSTA_109860 Talaromyces stipitatus TSTA_109860 N 0.000
TSTA_112350 Talaromyces stipitatus TSTA_112350 N 0.000
TSTA_112760 Talaromyces stipitatus TSTA_112760 N 0.000
TSTA_124040 Talaromyces stipitatus TSTA_124040 N 0.000
TSTA_125380 Talaromyces stipitatus TSTA_125380 N 0.000
TSTA_125400 Talaromyces stipitatus TSTA_125400 N 0.000