Bo7g025330 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo7g025330 T253158_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.896 0.896
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.896 0.896
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.792 0.792
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.792 0.792
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.771 0.771
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.771 0.771
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.771 0.771
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.771 0.771
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.750 0.750
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.750 0.750
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.729 0.729
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.729 0.729
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.729 0.729
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.729 0.729
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.729 0.729
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.729 0.729
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.729 0.729
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.729 0.729
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
Q7X9I6_MALDO
M11023_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_02 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g025330.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

1183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP26309 Atta cephalotes ACEP26309 I 0.000
ACYPI003971 Acyrthosiphon pisum ACYPI003971 I 0.000
Alligator_sinensis_CCG003052.1 Alligator sinensis Alligator_sinensis_CCG003052.1 I 0.000
CEBPB Oryctolagus cuniculus ENSOCUG00000024667 I 0.000
cebpb Xenopus tropicalis XB-GENE-479779 I 0.000
CEBPB Tursiops truncatus ENSTTRG00000003985 I 0.000
CEBPB Taeniopygia guttata ENSTGUG00000008707 I 0.000
Cebpb Rattus norvegicus ENSRNOG00000057347 I 0.000
CEBPB Pteropus vampyrus ENSPVAG00000003541 I 0.000
CEBPB Pan troglodytes ENSPTRG00000041263 I 0.000
CEBPB Otolemur garnettii ENSOGAG00000026467 I 0.000
Cebpb Mus musculus ENSMUSG00000056501 D 0.000
CEBPB Myotis lucifugus ENSMLUG00000002060 I 0.000
CEBPB Gorilla gorilla ENSGGOG00000025010 I 0.000
CEBPB Gallus gallus ENSGALG00000008014 I 0.000
CEBPB Homo sapiens ENSG00000172216 D 0.000
CEBPB Dasypus novemcinctus ENSDNOG00000041573 I 0.000
CEBPB Anolis carolinensis ENSACAG00000015567 I 0.000
CEBPB Callithrix jacchus ENSCJAG00000000526 I 0.000
CEBPB Canis familiaris ENSCAFG00000031326 I 0.000
cebpb.L Xenopus laevis XB-GENE-865306 I 0.000
CEBPE Macaca mulatta ENSMMUG00000019652 I 0.000
CEBPE Equus caballus ENSECAG00000012883 I 0.000
CEBPE Monodelphis domestica ENSMODG00000004586 I 0.000
Cebpe Mus musculus ENSMUSG00000052435 D 0.000
CEBPE Callithrix jacchus ENSCJAG00000008065 I 0.000
CEBPE Oryctolagus cuniculus ENSOCUG00000022235 I 0.000
CEBPE Otolemur garnettii ENSOGAG00000001312 I 0.000
CEBPE Procavia capensis ENSPCAG00000015039 I 0.000
CEBPE Pan troglodytes ENSPTRG00000006162 I 0.000
CEBPE Bos taurus ENSBTAG00000005952 I 0.000
CEBPE Pteropus vampyrus ENSPVAG00000005264 I 0.000
Cebpe Rattus norvegicus ENSRNOG00000014282 I 0.000
CEBPE Sus scrofa ENSSSCG00000002033 I 0.000
CEBPE Tursiops truncatus ENSTTRG00000017229 I 0.000
CEBPE Anolis carolinensis ENSACAG00000007268 I 0.000
cebpe Xenopus tropicalis XB-GENE-853430 I 0.000
CEBPE Myotis lucifugus ENSMLUG00000030209 I 0.000
CEBPE Erinaceus europaeus ENSEEUG00000005848 I 0.000
CEBPE Echinops telfairi ENSETEG00000000035 I 0.000
CEBPE Felis catus ENSFCAG00000002334 I 0.000
CEBPE Homo sapiens ENSG00000092067 D 0.000
CEBPE Gorilla gorilla ENSGGOG00000007419 I 0.000
CEBPE Cavia porcellus ENSCPOG00000014049 I 0.000
Cflo_01516--XP_394681.2_APIME Camponotus floridanus Cflo_01516--XP_394681.2_APIME I 0.000
CLEC002077 Cimex lectularius CLEC002077 I 0.000
Cmyd_10017449 Chelonia mydas Cmyd_10017449 I 0.000
EBP Gallus gallus ENSGALG00000026525 I 0.000
ENSAMEG00000007625 Ailuropoda melanoleuca ENSAMEG00000007625 I 0.000
ENSAMEG00000008255 Ailuropoda melanoleuca ENSAMEG00000008255 I 0.000
ENSAMEG00000013456 Ailuropoda melanoleuca ENSAMEG00000013456 I 0.000
ENSCAFG00000011433 Canis familiaris ENSCAFG00000011433 I 0.000
ENSCPOG00000000811 Cavia porcellus ENSCPOG00000000811 I 0.000
ENSCSAG00000016086 Chlorocebus sabaeus ENSCSAG00000016086 I 0.000
ENSCSAG00000018746 Chlorocebus sabaeus ENSCSAG00000018746 I 0.000
ENSFALG00000014081 Ficedula albicollis ENSFALG00000014081 I 0.000
ENSLACG00000002076 Latimeria chalumnae ENSLACG00000002076 I 0.000
ENSLACG00000005924 Latimeria chalumnae ENSLACG00000005924 I 0.000
ENSLAFG00000026180 Loxodonta africana ENSLAFG00000026180 I 0.000
ENSLOCG00000018358 Lepisosteus oculatus ENSLOCG00000018358 I 0.000
ENSMEUG00000000063 Macropus eugenii ENSMEUG00000000063 I 0.000
ENSMICG00000002591 Microcebus murinus ENSMICG00000002591 I 0.000
ENSMMUG00000004874 Macaca mulatta ENSMMUG00000004874 I 0.000
ENSMODG00000016314 Monodelphis domestica ENSMODG00000016314 I 0.000
ENSMPUG00000006815 Mustela putorius furo ENSMPUG00000006815 I 0.000
ENSMPUG00000019019 Mustela putorius furo ENSMPUG00000019019 I 0.000
ENSNLEG00000014958 Nomascus leucogenys ENSNLEG00000014958 I 0.000
ENSOANG00000007645 Ornithorhynchus anatinus ENSOANG00000007645 I 0.000
ENSOARG00000004414 Ovis aries ENSOARG00000004414 I 0.000
ENSOARG00000013395 Ovis aries ENSOARG00000013395 I 0.000
ENSOARG00000019360 Ovis aries ENSOARG00000019360 I 0.000
ENSP00000206513 Macaca fascicularis ENSP00000206513 I 0.000
ENSP00000206513-D1 Bos grunniens ENSP00000206513-D1 I 0.000
ENSPANG00000007537 Papio anubis ENSPANG00000007537 I 0.000
ENSPANG00000019646 Papio anubis ENSPANG00000019646 I 0.000
ENSPMAG00000004124 Petromyzon marinus ENSPMAG00000004124 I 0.000
ENSPPYG00000005659 Pongo abelii ENSPPYG00000005659 I 0.000
ENSPPYG00000011124 Pongo abelii ENSPPYG00000011124 I 0.000
ENSSHAG00000013989 Sarcophilus harrisii ENSSHAG00000013989 I 0.000
ENSSSCG00000024816 Sus scrofa ENSSSCG00000024816 I 0.000
ENSSSCG00000028739 Sus scrofa ENSSSCG00000028739 I 0.000
ENSSTOG00000007204 Ictidomys tridecemlineatus ENSSTOG00000007204 I 0.000
ENSTBEG00000017246 Tupaia belangeri ENSTBEG00000017246 I 0.000
GB44204 Apis mellifera GB44204 I 0.000
HHAL004160-PA Halyomorpha halys HHAL004160-PA I 0.000
Hsal_02456--XP_394681.2_APIME Harpegnathos saltator Hsal_02456--XP_394681.2_APIME I 0.000
ISCW019431 Ixodes scapularis ISCW019431 N 0.000
L798_13978 Zootermopsis nevadensis L798_13978 I 0.000
LDEC017703 Leptinotarsa decemlineata LDEC017703 I 0.000
Myotis_brandtii_CEBPE_10009435 Myotis brandtii Myotis_brandtii_CEBPE_10009435 I 0.000
NEMVEDRAFT_v1g114346 Nematostella vectensis NEMVEDRAFT_v1g114346 I 0.000
NV14868 Nasonia vitripennis NV14868 I 0.000
Ogr08265 Ophisaurus gracilis Ogr08265 I 0.000
Ogr08532 Ophisaurus gracilis Ogr08532 I 0.000
PHUM433250 Pediculus humanus PHUM433250 I 0.000
Pvit_03335 Pogona vitticeps Pvit_03335 I 0.000
SINV13631 Solenopsis invicta SINV13631 I 0.000
TC009220 Tribolium castaneum TC009220 I 0.000
tetur13g00160 Tetranychus urticae tetur13g00160 N 0.000
YQE_11799 Dendroctonus ponderosae YQE_11799 I 0.000