F503_00924 (Ophiostoma piceae uamh)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 F503_00924 T253886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.875 0.875
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.875 0.875
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.875 0.875
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.875 0.875
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.875 0.875
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPE08141 MADS box 61 108

Links

Other MADS box family TFs
Other Ophiostoma piceae uamh TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_05906 Capronia coronata A1O1_05906 N
A1O3_01091 Capronia epimyces A1O3_01091 N
AB03580.1 Alternaria brassicicola AB03580.1 N
ACLA_020500 Aspergillus clavatus CADACLAG00002437 N
ACLA_022120 Aspergillus clavatus CADACLAG00002202 N
AFUA_1G14860 Aspergillus fumigatus CADAFUAG00006932 N
ANIA_00671 Aspergillus nidulans CADANIAG00002003 N
AUEXF2481DRAFT_6430 Aureobasidium subglaciale AUEXF2481DRAFT_6430 N
BAUCODRAFT_145825 Baudoinia compniacensis BAUCODRAFT_145825 N
Bcin09g05210 Botrytis cinerea Bcin09g05210 N
BGHDH14_bgh03999 Blumeria graminis BGHDH14_bgh03999 N
CADAFLAG00001260 Aspergillus flavus CADAFLAG00001260 N
CADANGAG00001296 Aspergillus niger CADANGAG00001296 N
CADAORAG00003140 Aspergillus oryzae CADAORAG00003140 N
CH063_02579 Colletotrichum higginsianum CH063_02579 N
COCC4DRAFT_198480 Bipolaris maydis COCC4DRAFT_198480 N
COCCADRAFT_93203 Bipolaris zeicola COCCADRAFT_93203 N
COCMIDRAFT_107360 Bipolaris oryzae COCMIDRAFT_107360 N
COCSADRAFT_100739 Bipolaris sorokiniana COCSADRAFT_100739 N
COCVIDRAFT_115187 Bipolaris victoriae COCVIDRAFT_115187 N
CPUR_03430 Claviceps purpurea CPUR_03430 N
CSUB01_03903 Colletotrichum sublineola CSUB01_03903 N
EURHEDRAFT_512345 Aspergillus ruber EURHEDRAFT_512345 N
EV44_g6491 Erysiphe necator EV44_g6491 N
e_gw1.00042.343.1 Aspergillus carbonarius e_gw1.00042.343.1 N
e_gw1.24.46.1 Nectria haematococca e_gw1.24.46.1 N
FGRRES_20326 Fusarium graminearum FGRRES_20326 N
FOXG_16670 Fusarium oxysporum FOXG_16670 N
GLRG_08121 Colletotrichum graminicola GLRG_08121 N
GMDG_03103 Pseudogymnoascus destructans GMDG_03103 N
LEMA_P091720.1 Leptosphaeria maculans LEMA_P091720.1 N
M7I_2063 Glarea lozoyensis M7I_2063 N
MAM_03998 Metarhizium album MAM_03998 N
MPH_04521 Macrophomina phaseolina MPH_04521 N
NechaG55211 Fusarium solani NechaG55211 N
NFIA_010560 Neosartorya fischeri CADNFIAG00001625 N
PDIP_66000 Penicillium digitatum PDIP_66000 N
PEX1_093530 Penicillium expansum PEX1_093530 N
PMAA_074100 Penicillium marneffei PMAA_074100 N
PMAA_074100 Talaromyces marneffei PMAA_074100 N
PTT_12321 Pyrenophora teres PTT_12321 N
PV09_06423 Verruconis gallopava PV09_06423 N
PVAR5_1431 Byssochlamys spectabilis PVAR5_1431 N
SETTUDRAFT_86463 Setosphaeria turcica SETTUDRAFT_86463 N
TSTA_094640 Talaromyces stipitatus TSTA_094640 N
U727_00432193331 Penicillium solitum U727_00432193331 N
UCREL1_6533 Eutypa lata UCREL1_6533 N
UCRNP2_8766 Neofusicoccum parvum UCRNP2_8766 N
V499_01463 Pseudogymnoascus pannorum V499_01463 N
VDAG_03951 Verticillium dahliae VDAG_03951 N
W97_06376 Coniosporium apollinis W97_06376 N