bs (Drosophila melanogaster)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 FBgn0004101 T253974_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00		 Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1		 (Direct) (Direct)
bs
M03916_2.00		 Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.958 0.958
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.958 0.958
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.958 0.958
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.958 0.958
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.958 0.958
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.958 0.958
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.958 0.958
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.958 0.958
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.958 0.958
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.958 0.958
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.958 0.958
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.958 0.958
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.958 0.958
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.958 0.958
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.958 0.958
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.958 0.958
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.958 0.958
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.958 0.958
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.958 0.958
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.958 0.958
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.958 0.958
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.958 0.958
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.938 0.938
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.854 0.854
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.771 0.771
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.771 0.771
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.771 0.771
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.771 0.771
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.771 0.771
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0072178 MADS box 174 221
FBpp0288528 MADS box 174 221
FBpp0309973 MADS box 174 221

Links

Other MADS box family TFs
Other Drosophila melanogaster TFs

546 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000409 Calypte anna Aan_R000409 N
Afo_R004342 Aptenodytes forsteri Afo_R004342 N
Brh_R004716 Buceros rhinoceros Brh_R004716 N
ENSAMXG00000025839 Astyanax mexicanus ENSAMXG00000025839 N
ENSAPLG00000001579 Anas platyrhynchos ENSAPLG00000001579 N
ENSCPOG00000007711 Cavia porcellus ENSCPOG00000007711 N
ENSCSAG00000019288 Chlorocebus sabaeus ENSCSAG00000019288 N
ENSFALG00000015280 Ficedula albicollis ENSFALG00000015280 N
ENSGALG00000008547 Gallus gallus ENSGALG00000008547 N
ENSLACG00000007168 Latimeria chalumnae ENSLACG00000007168 N
ENSLOCG00000017908 Lepisosteus oculatus ENSLOCG00000017908 N
ENSMEUG00000014660 Macropus eugenii ENSMEUG00000014660 N
ENSMPUG00000018768 Mustela putorius furo ENSMPUG00000018768 N
ENSNLEG00000018235 Nomascus leucogenys ENSNLEG00000018235 N
ENSOCUG00000029472 Oryctolagus cuniculus ENSOCUG00000029472 N
ENSONIG00000009795 Oreochromis niloticus ENSONIG00000009795 N
ENSP00000216268 Macaca fascicularis ENSP00000216268 N
ENSPANG00000010852 Papio anubis ENSPANG00000010852 N
ENSPFOG00000020326 Poecilia formosa ENSPFOG00000020326 N
ENSPPYG00000011967 Pongo abelii ENSPPYG00000011967 N
ENSPSIG00000007193 Pelodiscus sinensis ENSPSIG00000007193 N
ENSSTOG00000023379 Ictidomys tridecemlineatus ENSSTOG00000023379 N
ENSXMAG00000019580 Xiphophorus maculatus ENSXMAG00000019580 N
Gfo_R008679 Geospiza fortis Gfo_R008679 N
Myotis_brandtii_ZBED4_10004868 Myotis brandtii Myotis_brandtii_ZBED4_10004868 N
Pvit_16079 Pogona vitticeps Pvit_16079 N
Tal_R001537 Tyto alba Tal_R001537 N
XP_002932233 Xenopus tropicalis XP_002932233 N
ZBED4 Loxodonta africana ENSLAFG00000017972 N
ZBED4 Anolis carolinensis ENSACAG00000009133 N
zbed4 Xenopus tropicalis XB-GENE-6076969 N
ZBED4 Canis familiaris ENSCAFG00000000714 N
zbed4 Danio rerio ENSDARG00000024306 N
ZBED4 Dasypus novemcinctus ENSDNOG00000018932 N
ZBED4 Homo sapiens ENSG00000100426 N
zbed4 Gasterosteus aculeatus ENSGACG00000019008 N
ZBED4 Gorilla gorilla ENSGGOG00000009913 N
ZBED4 Otolemur garnettii ENSOGAG00000013251 N
ZBED4 Macaca mulatta ENSMMUG00000018833 N
ZBED4 Monodelphis domestica ENSMODG00000025433 N
ZBED4 Tursiops truncatus ENSTTRG00000009815 N
zbed4 Tetraodon nigroviridis ENSTNIG00000006775 N
Zbed4 Mus musculus ENSMUSG00000034333 N
ZBED4 Sorex araneus ENSSARG00000001048 N
Zbed4 Rattus norvegicus ENSRNOG00000004588 N
ZBED4 Pteropus vampyrus ENSPVAG00000005134 N