HMPREF1541_07944 (Cyphellophora europaea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 HMPREF1541_07944 T254461_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ETN36956 MADS box 10 57

Links

Other MADS box family TFs
Other Cyphellophora europaea TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.000
BGIOSGA022010 Oryza indica BGIOSGA022010 N 0.000
Bo3g149640 Brassica oleracea Bo3g149640 I 0.000
BRADI1G49980 Brachypodium distachyon BRADI1G49980 N 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
GRMZM2G118690 Zea mays GRMZM2G118690 N 0.000
LPERR06G01660 Leersia perrieri LPERR06G01660 N 0.000
MLOC_15776 Hordeum vulgare MLOC_15776 N 0.000
OB06G11850 Oryza brachyantha OB06G11850 N 0.000
OBART06G01840 Oryza barthii OBART06G01840 N 0.000
OGLUM06G01860 Oryza glumaepatula OGLUM06G01860 N 0.000
OLONG_020703 Oryza longistaminata OLONG_020703 N 0.000
OMERI06G01780 Oryza meridionalis OMERI06G01780 N 0.000
ONIVA06G02210 Oryza nivara ONIVA06G02210 N 0.000
OPUNC06G01720 Oryza punctata OPUNC06G01720 N 0.000
ORGLA06G0019100 Oryza glaberrima ORGLA06G0019100 N 0.000
ORUFI06G01870 Oryza rufipogon ORUFI06G01870 N 0.000
OS06G0130600 Oryza sativa OS06G0130600 N 0.000
Pavir.Db02349 Panicum virgatum Pavir.Db02349 N 0.000
Pavir.J00934 Panicum virgatum Pavir.J00934 N 0.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
Sb10g002020 Sorghum bicolor Sb10g002020 N 0.000
Si006972m.g Setaria italica Si006972m.g N 0.000
Traes_4AL_A02408BC8 Triticum aestivum Traes_4AL_A02408BC8 N 0.000
TRIUR3_11677 Triticum urartu TRIUR3_11677 N 0.000