MESCA004860 (Megaselia scalaris)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MESCA004860 T254647_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.885 0.885
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.885 0.885
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.846 0.846
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.846 0.846
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.846 0.846
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.846 0.846
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.846 0.846
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.846 0.846
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.846 0.846
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.846 0.846
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.846 0.846
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.846 0.846
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.846 0.846
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.846 0.846
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.846 0.846
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.846 0.846
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.846 0.846
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.846 0.846
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.846 0.846
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.846 0.846
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.846 0.846
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.846 0.846
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.846 0.846
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.846 0.846
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.846 0.846
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MESCA004860-PA MADS box 175 200

Links

Other MADS box family TFs
Other Megaselia scalaris TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009653 Calypte anna Aan_R009653 I 0.000
Afo_R011420 Aptenodytes forsteri Afo_R011420 I 0.000
Alligator_sinensis_CCG008426.1 Alligator sinensis Alligator_sinensis_CCG008426.1 I 0.000
A_04922 Schistosoma haematobium A_04922 I 0.000
CLEC000012 Cimex lectularius CLEC000012 I 0.000
Cmyd_10016714 Chelonia mydas Cmyd_10016714 I 0.000
csin100553 Clonorchis sinensis csin100553 I 0.000
D918_05377 Trichuris suis D918_05377 I 0.000
ECANG7_02113 Echinococcus canadensis ECANG7_02113 I 0.000
EmuJ_000693700 Echinococcus multilocularis EmuJ_000693700 I 0.000
ENSACAG00000017732 Anolis carolinensis ENSACAG00000017732 I 0.000
ENSAPLG00000010851 Anas platyrhynchos ENSAPLG00000010851 I 0.000
ENSCSAG00000007180 Chlorocebus sabaeus ENSCSAG00000007180 I 0.000
ENSFALG00000006654 Ficedula albicollis ENSFALG00000006654 I 0.000
ENSGALG00000005728 Gallus gallus ENSGALG00000005728 I 0.000
ENSMEUG00000008968 Macropus eugenii ENSMEUG00000008968 I 0.000
ENSMICG00000000836 Microcebus murinus ENSMICG00000000836 I 0.000
ENSMPUG00000000392 Mustela putorius furo ENSMPUG00000000392 I 0.000
ENSPFOG00000015489 Poecilia formosa ENSPFOG00000015489 I 0.000
ENSPSIG00000004712 Pelodiscus sinensis ENSPSIG00000004712 I 0.000
ENSSHAG00000012720 Sarcophilus harrisii ENSSHAG00000012720 I 0.000
ENSSTOG00000020735 Ictidomys tridecemlineatus ENSSTOG00000020735 I 0.000
ENSTSYG00000010094 Tarsius syrichta ENSTSYG00000010094 I 0.000
ENSXMAG00000017028 Xiphophorus maculatus ENSXMAG00000017028 I 0.000
Foxf1 Rattus norvegicus ENSRNOG00000049906 I 0.000
FOXF1 Cavia porcellus ENSCPOG00000000954 I 0.000
FOXF1 Taeniopygia guttata ENSTGUG00000004150 I 0.000
Foxf1 Mus musculus ENSMUSG00000042812 I 0.000
FOXF2 Loxodonta africana ENSLAFG00000002074 I 0.000
FOXF2 Canis familiaris ENSCAFG00000009195 I 0.000
FOXF2 Callithrix jacchus ENSCJAG00000019592 I 0.000
FOXF2 Myotis lucifugus ENSMLUG00000030088 I 0.000
FOXF2 Monodelphis domestica ENSMODG00000008307 I 0.000
FOXF2 Dasypus novemcinctus ENSDNOG00000031153 I 0.000
Foxf2 Dipodomys ordii ENSDORG00000001552 I 0.000
Foxf2 Mus musculus ENSMUSG00000038402 I 0.000
FOXF2 Ornithorhynchus anatinus ENSOANG00000015736 I 0.000
FOXF2 Felis catus ENSFCAG00000005901 I 0.000
FOXF2 Homo sapiens ENSG00000137273 D 0.000
FOXF2 Oryctolagus cuniculus ENSOCUG00000013970 I 0.000
FOXF2 Otolemur garnettii ENSOGAG00000005954 I 0.000
FOXF2 Ochotona princeps ENSOPRG00000010077 I 0.000
FOXF2 Pan troglodytes ENSPTRG00000017662 I 0.000
foxf2a Takifugu rubripes ENSTRUG00000011537 I 0.000
foxf2a Oryzias latipes ENSORLG00000017250 I 0.000
foxf2a Tetraodon nigroviridis ENSTNIG00000008527 I 0.000
Gfo_R000500 Geospiza fortis Gfo_R000500 I 0.000
Gfo_R003355 Geospiza fortis Gfo_R003355 I 0.000
ISCW021480 Ixodes scapularis ISCW021480 I 0.000
L596_g3930 Steinernema carpocapsae L596_g3930 I 0.000
MCOS_0000840801 Mesocestoides corti MCOS_0000840801 I 0.000
Ocbimv22026844m.g Octopus bimaculoides Ocbimv22026844m.g I 0.000
PTRK_0001370600 Parastrongyloides trichosuri PTRK_0001370600 I 0.000
Pvit_05670 Pogona vitticeps Pvit_05670 I 0.000
Pvit_16864 Pogona vitticeps Pvit_16864 I 0.000
Sjc_0067660 Schistosoma japonicum Sjc_0067660 I 0.000
Smp_076300 Schistosoma mansoni Smp_076300 I 0.000
SPAL_0001515900 Strongyloides papillosus SPAL_0001515900 I 0.000
SSTP_0000592700 Strongyloides stercoralis SSTP_0000592700 I 0.000
SVE_0835400 Strongyloides venezuelensis SVE_0835400 I 0.000
T265_04564 Opisthorchis viverrini T265_04564 I 0.000
TASK_0000386601 Taenia asiatica TASK_0000386601 I 0.000
TMUE_s0032003300 Trichuris muris TMUE_s0032003300 I 0.000
TRE_0000173401 Trichobilharzia regenti TRE_0000173401 N 0.000
TriadG30602 Trichoplax adhaerens TriadG30602 I 0.000
TsM_000061900 Taenia solium TsM_000061900 I 0.000
TTRE_0000174501 Trichuris trichiura TTRE_0000174501 I 0.000