MTR_5g066960 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_5g066960 T254806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.917 0.917
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.917 0.917
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.833 0.833
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.771 0.771
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.771 0.771
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.750 0.750
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.750 0.750
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.750 0.750
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES98316 MADS box 10 57

Links

Other MADS box family TFs
Other Medicago truncatula TFs

763 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_04933 Capronia coronata A1O1_04933 I 0.000
A1O9_02443 Exophiala aquamarina A1O9_02443 I 0.000
A1Q1_01571 Trichosporon asahii A1Q1_01571 I 0.000
AGABI2DRAFT_56560 Agaricus bisporus AGABI2DRAFT_56560 I 0.000
BN7_5566 Wickerhamomyces ciferrii BN7_5566 I 0.000
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.000
CC1G_11882 Coprinopsis cinerea CC1G_11882 I 0.000
CERSUDRAFT_85760 Ceriporiopsis subvermispora CERSUDRAFT_85760 I 0.000
CNF04730 Cryptococcus neoformans CNF04730 I 0.000
CTRG_00206 Candida tropicalis CTRG_00206 I 0.000
CY34DRAFT_810312 Suillus luteus CY34DRAFT_810312 I 0.000
DICSQDRAFT_109066 Dichomitus squalens DICSQDRAFT_109066 I 0.000
estExt_fgenesh3_kg.C_50121 Heterobasidion annosum estExt_fgenesh3_kg.C_50121 I 0.000
e_gw1.7.444.1 Tremella mesenterica e_gw1.7.444.1 I 0.000
fgenesh1_pg.C_scaffold_9000255 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000255 I 0.000
FIBRA_06299 Fibroporia radiculosa FIBRA_06299 I 0.000
FOMPIDRAFT_1026139 Fomitopsis pinicola FOMPIDRAFT_1026139 I 0.000
GALMADRAFT_227783 Galerina marginata GALMADRAFT_227783 I 0.000
GLOTRDRAFT_99857 Gloeophyllum trabeum GLOTRDRAFT_99857 I 0.000
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.000
HETIRDRAFT_440787 Heterobasidion irregulare HETIRDRAFT_440787 I 0.000
HMPREF1541_00911 Cyphellophora europaea HMPREF1541_00911 I 0.000
HYDPIDRAFT_138070 Hydnomerulius pinastri HYDPIDRAFT_138070 I 0.000
JAAARDRAFT_49184 Jaapia argillacea JAAARDRAFT_49184 I 0.000
K443DRAFT_671387 Laccaria amethystina K443DRAFT_671387 I 0.000
L804_02852 Cryptococcus gattii L804_02852 I 0.000
LACBIDRAFT_184303 Laccaria bicolor LACBIDRAFT_184303 I 0.000
LEMA_P074670.1 Leptosphaeria maculans LEMA_P074670.1 I 0.000
M378DRAFT_77996 Amanita muscaria M378DRAFT_77996 I 0.000
M404DRAFT_36434 Pisolithus tinctorius M404DRAFT_36434 N 0.000
M413DRAFT_45791 Hebeloma cylindrosporum M413DRAFT_45791 I 0.000
MELLADRAFT_31192 Melampsora laricipopulina MELLADRAFT_31192 I 0.000
Moror_35 Moniliophthora roreri Moror_35 I 0.000
MPER_13045 Moniliophthora perniciosa MPER_13045 I 0.000
MSY001_2636 Malassezia sympodialis MSY001_2636 I 0.000
nhp6 Dictyostelium discoideum DDB_G0270260 N 0.000
PaG_04789 Pseudozyma aphidis PaG_04789 I 0.000
PAN0_004d2231 Pseudozyma antarctica PAN0_004d2231 I 0.000
PAXRUDRAFT_828263 Paxillus rubicundulus PAXRUDRAFT_828263 I 0.000
PHACADRAFT_164552 Phanerochaete carnosa PHACADRAFT_164552 I 0.000
PHLGIDRAFT_113118 Phlebiopsis gigantea PHLGIDRAFT_113118 I 0.000
PILCRDRAFT_812728 Piloderma croceum PILCRDRAFT_812728 I 0.000
PLEOSDRAFT_1048718 Pleurotus ostreatus PLEOSDRAFT_1048718 I 0.000
PLICRDRAFT_46399 Plicaturopsis crispa PLICRDRAFT_46399 I 0.000
PSEUBRA_SCAF4g05002 Pseudozyma brasiliensis PSEUBRA_SCAF4g05002 I 0.000
SCHCODRAFT_76744 Schizophyllum commune SCHCODRAFT_76744 I 0.000
SERLA73DRAFT_187779 Serpula lacrymans SERLA73DRAFT_187779 I 0.000
sr13567 Sporisorium reilianum sr13567 I 0.000
UM02364 Ustilago maydis UM02364 I 0.000
W97_04494 Coniosporium apollinis W97_04494 I 0.000