O9G_005180 (Rozella allomycis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 O9G_005180 T254877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.929 0.929
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.929 0.929
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.929 0.929
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.929 0.929
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.929 0.929
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.929 0.929
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.929 0.929
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.929 0.929
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.929 0.929
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.929 0.929
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.929 0.929
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.929 0.929
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.929 0.929
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.929 0.929
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.929 0.929
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.929 0.929
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.929 0.929
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.929 0.929
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.929 0.929
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.929 0.929
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.929 0.929
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.929 0.929
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.929 0.929
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.893 0.893
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.893 0.893
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.821 0.821
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.786 0.786
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.786 0.786
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.786 0.786
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.786 0.786
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.786 0.786
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPZ35213 MADS box 278 305

Links

Other MADS box family TFs
Other Rozella allomycis TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R005482 Aptenodytes forsteri Afo_R005482 N
Alligator_sinensis_CCG000203.1 Alligator sinensis Alligator_sinensis_CCG000203.1 N
Brh_R007650 Buceros rhinoceros Brh_R007650 N
ENSAMEG00000005235 Ailuropoda melanoleuca ENSAMEG00000005235 N
ENSCPOG00000006428 Cavia porcellus ENSCPOG00000006428 N
ENSCSAG00000006785 Chlorocebus sabaeus ENSCSAG00000006785 N
ENSFALG00000005129 Ficedula albicollis ENSFALG00000005129 N
ENSLACG00000009844 Latimeria chalumnae ENSLACG00000009844 N
ENSLOCG00000003056 Lepisosteus oculatus ENSLOCG00000003056 N
ENSNLEG00000004615 Nomascus leucogenys ENSNLEG00000004615 N
ENSOARG00000019468 Ovis aries ENSOARG00000019468 N
ENSP00000420721 Macaca fascicularis ENSP00000420721 N
ENSP00000420721-D1 Bos grunniens ENSP00000420721-D1 N
ENSPANG00000019193 Papio anubis ENSPANG00000019193 N
ENSPPYG00000013537 Pongo abelii ENSPPYG00000013537 N
ENSSHAG00000006667 Sarcophilus harrisii ENSSHAG00000006667 N
ENSSTOG00000029223 Ictidomys tridecemlineatus ENSSTOG00000029223 N
ENSTGUG00000013363 Taeniopygia guttata ENSTGUG00000013363 N
ENSTGUG00000013682 Taeniopygia guttata ENSTGUG00000013682 N
Gfo_R000246 Geospiza fortis Gfo_R000246 N
Myotis_brandtii_KIAA2018_10016078 Myotis brandtii Myotis_brandtii_KIAA2018_10016078 N
Pvit_04479 Pogona vitticeps Pvit_04479 N
Tal_R000800 Tyto alba Tal_R000800 N
Usf3 Rattus norvegicus ENSRNOG00000027756 N
USF3 Sus scrofa ENSSSCG00000011918 N
USF3 Tursiops truncatus ENSTTRG00000000281 N
USF3 Vicugna pacos ENSVPAG00000011950 N
usf3 Xenopus tropicalis XB-GENE-6459248 N
USF3 Anolis carolinensis ENSACAG00000006745 N
USF3 Loxodonta africana ENSLAFG00000009455 N
USF3 Bos taurus ENSBTAG00000021000 N
USF3 Canis familiaris ENSCAFG00000010692 N
USF3 Callithrix jacchus ENSCJAG00000020264 N
USF3 Dasypus novemcinctus ENSDNOG00000040900 N
USF3 Equus caballus ENSECAG00000024549 N
USF3 Felis catus ENSFCAG00000004876 N
USF3 Homo sapiens ENSG00000176542 N
USF3 Gorilla gorilla ENSGGOG00000001005 N
USF3 Pteropus vampyrus ENSPVAG00000006151 N
USF3 Meleagris gallopavo ENSMGAG00000014246 N
USF3 Myotis lucifugus ENSMLUG00000004274 N
USF3 Monodelphis domestica ENSMODG00000018158 N
Usf3 Mus musculus ENSMUSG00000068284 N
USF3 Oryctolagus cuniculus ENSOCUG00000013550 N
USF3 Otolemur garnettii ENSOGAG00000032665 N
USF3 Ochotona princeps ENSOPRG00000014253 N
USF3 Pan troglodytes ENSPTRG00000030159 N