OMERI03G06190 (Oryza meridionalis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OMERI03G06190 T255169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.812 0.812
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.812 0.812
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.812 0.812
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.792 0.792
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.792 0.792
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.792 0.792
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI03G06190.1 MADS box 28 75

Links

Other MADS box family TFs
Other Oryza meridionalis TFs

586 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ahr1a Takifugu rubripes ENSTRUG00000008980 N 0.000
ahr2 Tetraodon nigroviridis ENSTNIG00000015652 N 0.000
ahrr Takifugu rubripes ENSTRUG00000003745 N 0.000
AHRR Pteropus vampyrus ENSPVAG00000007881 N 0.000
ahrrb Gasterosteus aculeatus ENSGACG00000001925 N 0.000
ahrrb Tetraodon nigroviridis ENSTNIG00000008751 N 0.000
ahrrb Oryzias latipes ENSORLG00000005309 N 0.000
Alligator_sinensis_CCG008492.1 Alligator sinensis Alligator_sinensis_CCG008492.1 N 0.000
ENSAMXG00000013942 Astyanax mexicanus ENSAMXG00000013942 N 0.000
ENSAMXG00000015160 Astyanax mexicanus ENSAMXG00000015160 N 0.000
ENSDORG00000008881 Dipodomys ordii ENSDORG00000008881 N 0.000
ENSFCAG00000024757 Felis catus ENSFCAG00000024757 N 0.000
ENSGACG00000008458 Gasterosteus aculeatus ENSGACG00000008458 N 0.000
ENSGMOG00000004692 Gadus morhua ENSGMOG00000004692 N 0.000
ENSGMOG00000009114 Gadus morhua ENSGMOG00000009114 N 0.000
ENSLAFG00000030495 Loxodonta africana ENSLAFG00000030495 N 0.000
ENSMMUG00000030507 Macaca mulatta ENSMMUG00000030507 N 0.000
ENSMMUP00000035736 Macaca fascicularis ENSMMUP00000035736 N 0.000
ENSMODG00000028175 Monodelphis domestica ENSMODG00000028175 N 0.000
ENSONIG00000012216 Oreochromis niloticus ENSONIG00000012216 N 0.000
ENSONIG00000017966 Oreochromis niloticus ENSONIG00000017966 N 0.000
ENSPFOG00000008038 Poecilia formosa ENSPFOG00000008038 N 0.000
ENSPFOG00000012230 Poecilia formosa ENSPFOG00000012230 N 0.000
ENSPFOG00000018959 Poecilia formosa ENSPFOG00000018959 N 0.000
ENSTNIG00000015651 Tetraodon nigroviridis ENSTNIG00000015651 N 0.000
ENSXMAG00000005059 Xiphophorus maculatus ENSXMAG00000005059 N 0.000
Sakowv30000409m.g Saccoglossus kowalevskii Sakowv30000409m.g N 0.000
yakG008778 Bos grunniens yakG008778 N 0.000