PGSC0003DMG400016203 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400016203 T255620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.938 0.938
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.938 0.938
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.938 0.938
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.812 0.812
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.771 0.771
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.729 0.729
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400041773 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

1068 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008050 Calypte anna Aan_R008050 N 0.000
Afo_R011854 Aptenodytes forsteri Afo_R011854 N 0.000
Alligator_sinensis_CCG016138.1 Alligator sinensis Alligator_sinensis_CCG016138.1 N 0.000
ENSAMEG00000012889 Ailuropoda melanoleuca ENSAMEG00000012889 N 0.000
ENSAMXG00000009099 Astyanax mexicanus ENSAMXG00000009099 N 0.000
ENSLACG00000009597 Latimeria chalumnae ENSLACG00000009597 N 0.000
ENSMPUG00000008085 Mustela putorius furo ENSMPUG00000008085 N 0.000
ENSNLEG00000016765 Nomascus leucogenys ENSNLEG00000016765 N 0.000
ENSOARG00000006161 Ovis aries ENSOARG00000006161 N 0.000
ENSONIG00000015003 Oreochromis niloticus ENSONIG00000015003 N 0.000
ENSP00000363241 Macaca fascicularis ENSP00000363241 N 0.000
ENSP00000363241-D1 Bos grunniens ENSP00000363241-D1 N 0.000
ENSPPYG00000019526 Pongo abelii ENSPPYG00000019526 N 0.000
ENSPSIG00000016588 Pelodiscus sinensis ENSPSIG00000016588 N 0.000
ENSSHAG00000015909 Sarcophilus harrisii ENSSHAG00000015909 N 0.000
ENSSTOG00000022322 Ictidomys tridecemlineatus ENSSTOG00000022322 N 0.000
Gfo_R015405 Geospiza fortis Gfo_R015405 N 0.000
Myotis_brandtii_ZNF618_10028443 Myotis brandtii Myotis_brandtii_ZNF618_10028443 N 0.000
Zfp618 Mus musculus ENSMUSG00000028358 N 0.000
Zfp618 Dipodomys ordii ENSDORG00000014008 N 0.000
Zfp618 Rattus norvegicus ENSRNOG00000006719 N 0.000
znf618 Tetraodon nigroviridis ENSTNIG00000018743 N 0.000
ZNF618 Taeniopygia guttata ENSTGUG00000002591 N 0.000
ZNF618 Tupaia belangeri ENSTBEG00000000415 N 0.000
ZNF618 Tursiops truncatus ENSTTRG00000005353 N 0.000
ZNF618 Sus scrofa ENSSSCG00000005484 N 0.000
ZNF618 Cavia porcellus ENSCPOG00000010468 N 0.000
ZNF618 Canis familiaris ENSCAFG00000003282 N 0.000
ZNF618 Pteropus vampyrus ENSPVAG00000011944 N 0.000
ZNF618 Bos taurus ENSBTAG00000025659 N 0.000
ZNF618 Procavia capensis ENSPCAG00000000187 N 0.000
ZNF618 Homo sapiens ENSG00000157657 N 0.000
ZNF618 Ochotona princeps ENSOPRG00000005497 N 0.000
ZNF618 Otolemur garnettii ENSOGAG00000014816 N 0.000
ZNF618 Oryctolagus cuniculus ENSOCUG00000002794 N 0.000
ZNF618 Dasypus novemcinctus ENSDNOG00000012611 N 0.000
ZNF618 Ornithorhynchus anatinus ENSOANG00000005539 N 0.000
ZNF618 Equus caballus ENSECAG00000020621 N 0.000
ZNF618 Monodelphis domestica ENSMODG00000004063 N 0.000
ZNF618 Macaca mulatta ENSMMUG00000008557 N 0.000
ZNF618 Microcebus murinus ENSMICG00000015151 N 0.000
ZNF618 Meleagris gallopavo ENSMGAG00000001586 N 0.000
ZNF618 Loxodonta africana ENSLAFG00000011286 N 0.000
ZNF618 Felis catus ENSFCAG00000013342 N 0.000
ZNF618 Gorilla gorilla ENSGGOG00000014177 N 0.000
ZNF618 Gallus gallus ENSGALG00000008886 N 0.000
znf618 Gasterosteus aculeatus ENSGACG00000016617 N 0.000