POPTR_0007s03290 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0007s03290 T255835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.792 0.792
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.792 0.792
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.792 0.792
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s03290.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02644 Capronia coronata A1O1_02644 I 0.000
A1O3_05207 Capronia epimyces A1O3_05207 I 0.000
A1O5_01739 Cladophialophora psammophila A1O5_01739 I 0.000
A1O7_08560 Cladophialophora yegresii A1O7_08560 I 0.000
AB00299.1 Alternaria brassicicola AB00299.1 I 0.000
ACLA_075120 Aspergillus clavatus CADACLAG00006456 I 0.000
ACRE_049560 Acremonium chrysogenum ACRE_049560 I 0.000
AFUA_2G16160 Aspergillus fumigatus CADAFUAG00004679 I 0.000
ANIA_02136 Aspergillus nidulans CADANIAG00008814 I 0.000
AOL_s00083g408 Arthrobotrys oligospora AOL_s00083g408 I 0.000
ARB_03230 Arthroderma benhamiae ARB_03230 I 0.000
ATEG_02328 Aspergillus terreus CADATEAG00000227 I 0.000
AUEXF2481DRAFT_29116 Aureobasidium subglaciale AUEXF2481DRAFT_29116 I 0.000
BAUCODRAFT_66299 Baudoinia compniacensis BAUCODRAFT_66299 I 0.000
BBA_00830 Beauveria bassiana BBA_00830 I 0.000
Bcin08g06020 Botrytis cinerea Bcin08g06020 I 0.000
BGHDH14_bgh04283 Blumeria graminis BGHDH14_bgh04283 I 0.000
CADAFLAG00003349 Aspergillus flavus CADAFLAG00003349 I 0.000
CADANGAG00012333 Aspergillus niger CADANGAG00012333 I 0.000
CADAORAG00005796 Aspergillus oryzae CADAORAG00005796 I 0.000
CCM_05608 Cordyceps militaris CCM_05608 I 0.000
CFIO01_07548 Colletotrichum fioriniae CFIO01_07548 I 0.000
CGGC5_11552 Colletotrichum gloeosporioides CGGC5_11552 I 0.000
CH063_02161 Colletotrichum higginsianum CH063_02161 I 0.000
CHGG_02677 Chaetomium globosum CHGG_02677 I 0.000
CIMG_09527 Coccidioides immitis CIMG_09527 N 0.000
CMQ_6311 Grosmannia clavigera CMQ_6311 I 0.000
Cob_12019 Colletotrichum orbiculare Cob_12019 I 0.000
COCC4DRAFT_56976 Bipolaris maydis COCC4DRAFT_56976 I 0.000
COCCADRAFT_27331 Bipolaris zeicola COCCADRAFT_27331 I 0.000
COCMIDRAFT_2306 Bipolaris oryzae COCMIDRAFT_2306 I 0.000
COCSADRAFT_174784 Bipolaris sorokiniana COCSADRAFT_174784 I 0.000
COCVIDRAFT_17513 Bipolaris victoriae COCVIDRAFT_17513 I 0.000
CPC735_018780 Coccidioides posadasii CPC735_018780 N 0.000
CPUR_06724 Claviceps purpurea CPUR_06724 I 0.000
CSUB01_02966 Colletotrichum sublineola CSUB01_02966 I 0.000
CTHT_0052970 Chaetomium thermophilum CTHT_0052970 I 0.000
DOTSEDRAFT_122593 Dothistroma septosporum DOTSEDRAFT_122593 I 0.000
estExt_fgenesh1_pg.C_10631 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_10631 I 0.000
estExt_fgenesh1_pg.C_11203 Cryphonectria parasitica estExt_fgenesh1_pg.C_11203 I 0.000
estExt_fgenesh1_pm.C_sca_6_chr9_2_00089 Nectria haematococca estExt_fgenesh1_pm.C_sca_6_chr9_2_00089 I 0.000
estExt_Genewise1Plus.C_11214 Neurospora discreta estExt_Genewise1Plus.C_11214 I 0.000
EURHEDRAFT_376515 Aspergillus ruber EURHEDRAFT_376515 I 0.000
EV44_g5594 Erysiphe necator EV44_g5594 I 0.000
F503_00618 Ophiostoma piceae uamh F503_00618 I 0.000
FFUJ_02710 Fusarium fujikuroi FFUJ_02710 I 0.000
fgenesh1_kg.C_chr_2000382 Mycosphaerella graminicola fgenesh1_kg.C_chr_2000382 I 0.000
fgenesh1_pm.00815_#_36 Aspergillus carbonarius fgenesh1_pm.00815_#_36 I 0.000
FGRRES_07133 Fusarium graminearum FGRRES_07133 I 0.000
FPSE_04097 Fusarium pseudograminearum FPSE_04097 I 0.000
FVEG_08032 Fusarium verticillioides FVEG_08032 I 0.000
G647_07533 Cladophialophora carrionii G647_07533 I 0.000
GGTG_00248 Gaeumannomyces graminis GGTG_00248 I 0.000
GLRG_03269 Colletotrichum graminicola GLRG_03269 I 0.000
GMDG_05406 Pseudogymnoascus destructans GMDG_05406 I 0.000
GSTUM_00005719001 Tuber melanosporum GSTUM_00005719001 I 0.000
H072_1268 Dactylellina haptotyla H072_1268 I 0.000
H101_06083 Trichophyton interdigitale H101_06083 I 0.000
H102_03959 Trichophyton rubrum H102_03959 I 0.000
H105_03987 Trichophyton soudanense H105_03987 I 0.000
HMPREF1120_00798 Exophiala dermatitidis HMPREF1120_00798 I 0.000
HMPREF1624_01153 Sporothrix schenckii HMPREF1624_01153 I 0.000
M437DRAFT_36734 Aureobasidium melanogenum M437DRAFT_36734 I 0.000
M438DRAFT_279552 Aureobasidium pullulans M438DRAFT_279552 I 0.000
MAC_00493 Metarhizium acridum MAC_00493 I 0.000
MAJ_02006 Metarhizium majus MAJ_02006 I 0.000
MAM_07504 Metarhizium album MAM_07504 I 0.000
MANI_005306 Metarhizium anisopliae MANI_005306 I 0.000
MAPG_11053 Magnaporthe poae MAPG_11053 I 0.000
MBM_03820 Marssonina brunnea MBM_03820 I 0.000
MBR_03811 Metarhizium brunneum MBR_03811 I 0.000
MCYG_03841 Microsporum canis MCYG_03841 I 0.000
MCYG_03841 Arthroderma otae MCYG_03841 I 0.000
MGG_07063 Magnaporthe oryzae MGG_07063 I 0.000
MGU_05868 Metarhizium guizhouense MGU_05868 I 0.000
MGYG_07809 Microsporum gypseum MGYG_07809 I 0.000
MPH_02318 Macrophomina phaseolina MPH_02318 I 0.000
MYCFIDRAFT_131841 Pseudocercospora fijiensis MYCFIDRAFT_131841 I 0.000
Mycgr3G79543 Zymoseptoria tritici Mycgr3G79543 I 0.000
MYCTH_2300589 Myceliophthora thermophila MYCTH_2300589 I 0.000
NCU01243 Neurospora crassa NCU01243 D 0.000
NechaG105273 Fusarium solani NechaG105273 I 0.000
NEUTE1DRAFT_57664 Neurospora tetrasperma NEUTE1DRAFT_57664 I 0.000
NFIA_091420 Neosartorya fischeri CADNFIAG00007675 I 0.000
OIDMADRAFT_115449 Oidiodendron maius OIDMADRAFT_115449 I 0.000
Pc21g01880 Penicillium chrysogenum Pc21g01880 I 0.000
PCH_Pc21g01880 Penicillium rubens PCH_Pc21g01880 I 0.000
PDE_07750 Penicillium oxalicum PDE_07750 I 0.000
PDIP_80460 Penicillium digitatum PDIP_80460 I 0.000
PEX1_034880 Penicillium expansum PEX1_034880 I 0.000
PFICI_07655 Pestalotiopsis fici PFICI_07655 I 0.000
PITC_083010 Penicillium italicum PITC_083010 I 0.000
PMAA_038040 Talaromyces marneffei PMAA_038040 I 0.000
PMAA_038040 Penicillium marneffei PMAA_038040 I 0.000
PODANS_2_3270 Podospora anserina PODANS_2_3270 I 0.000
PTRG_09915 Pyrenophora triticirepentis PTRG_09915 I 0.000
PTT_08856 Pyrenophora teres PTT_08856 I 0.000
PV04_09113 Capronia semiimmersa PV04_09113 I 0.000
PV05_00645 Exophiala xenobiotica PV05_00645 I 0.000
PV06_07336 Exophiala oligosperma PV06_07336 I 0.000
PV07_00703 Cladophialophora immunda PV07_00703 I 0.000
PV08_01635 Exophiala spinifera PV08_01635 I 0.000
PV09_05237 Verruconis gallopava PV09_05237 I 0.000
PV10_04586 Exophiala mesophila PV10_04586 I 0.000
PV11_02999 Exophiala sideris PV11_02999 I 0.000
S40285_04268 Stachybotrys chlorohalonata S40285_04268 I 0.000
S40288_01230 Stachybotrys chartarum S40288_01230 I 0.000
SAPIO_CDS10407 Scedosporium apiospermum SAPIO_CDS10407 I 0.000
SBOR_5353 Sclerotinia borealis SBOR_5353 I 0.000
SEPMUDRAFT_60609 Sphaerulina musiva SEPMUDRAFT_60609 I 0.000
SETTUDRAFT_102674 Setosphaeria turcica SETTUDRAFT_102674 I 0.000
SMAC_03943 Sordaria macrospora SMAC_03943 I 0.000
SNOG_10444 Stagonospora nodorum SNOG_10444 I 0.000
SNOG_10444 Phaeosphaeria nodorum SNOG_10444 I 0.000
SPBR_08176 Sporothrix brasiliensis SPBR_08176 I 0.000
TEQG_03253 Trichophyton equinum TEQG_03253 I 0.000
TESG_04315 Trichophyton tonsurans TESG_04315 I 0.000
THITE_2106716 Thielavia terrestris THITE_2106716 I 0.000
TRIATDRAFT_233014 Trichoderma atroviride TRIATDRAFT_233014 I 0.000
TRIVIDRAFT_63141 Trichoderma virens TRIVIDRAFT_63141 I 0.000
TRV_02459 Trichophyton verrucosum TRV_02459 I 0.000
TSTA_053980 Talaromyces stipitatus TSTA_053980 I 0.000
U727_00430142291 Penicillium solitum U727_00430142291 I 0.000
UCREL1_4926 Eutypa lata UCREL1_4926 I 0.000
UCRNP2_4556 Neofusicoccum parvum UCRNP2_4556 I 0.000
UCRPA7_1548 Togninia minima UCRPA7_1548 I 0.000
UREG_04794 Uncinocarpus reesii UREG_04794 N 0.000
UV8b_2437 Ustilaginoidea virens UV8b_2437 I 0.000
V499_03435 Pseudogymnoascus pannorum V499_03435 I 0.000
VDAG_08332 Verticillium dahliae VDAG_08332 I 0.000
VDBG_00044 Verticillium albo atrum VDBG_00044 I 0.000
VDBG_00044 Verticillium alfalfae VDBG_00044 I 0.000
VHEMI01335 Torrubiella hemipterigena VHEMI01335 I 0.000
X797_006177 Metarhizium robertsii X797_006177 I 0.000
Z517_05341 Fonsecaea pedrosoi Z517_05341 I 0.000
Z519_01699 Cladophialophora bantiana Z519_01699 I 0.000