POPTR_0013s00350 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0013s00350 T255863_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s00350.1 MADS box 10 58

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001830 Calypte anna Aan_R001830 N 0.000
Afo_R015384 Aptenodytes forsteri Afo_R015384 N 0.000
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N 0.000
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N 0.000
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N 0.000
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N 0.000
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N 0.000
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N 0.000
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N 0.000
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N 0.000
ENSP00000337889 Macaca fascicularis ENSP00000337889 N 0.000
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N 0.000
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N 0.000
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N 0.000
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N 0.000
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N 0.000
Gfo_R003202 Geospiza fortis Gfo_R003202 N 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
mxd1 Xenopus tropicalis XB-GENE-943715 N 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
mxd1 Danio rerio ENSDARG00000032039 N 0.000
mxd1.L Xenopus laevis XB-GENE-943720 N 0.000
MXD4 Taeniopygia guttata ENSTGUG00000010530 N 0.000
MXD4 Felis catus ENSFCAG00000012927 N 0.000
MXD4 Otolemur garnettii ENSOGAG00000011305 N 0.000
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N 0.000
mxd4 Takifugu rubripes ENSTRUG00000003046 N 0.000
MXD4 Tursiops truncatus ENSTTRG00000013740 N 0.000
MXD4 Echinops telfairi ENSETEG00000005547 N 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
mxd4 Danio rerio ENSDARG00000054031 N 0.000
MXD4 Cavia porcellus ENSCPOG00000022492 N 0.000
MXD4 Callithrix jacchus ENSCJAG00000014432 N 0.000
MXD4 Canis familiaris ENSCAFG00000014873 N 0.000
mxd4 Xenopus tropicalis XB-GENE-6257573 N 0.000
MXD4 Bos taurus ENSBTAG00000015209 N 0.000
MXD4 Meleagris gallopavo ENSMGAG00000013027 N 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
Mxd4 Mus musculus ENSMUSG00000037235 N 0.000
mxd4 Oryzias latipes ENSORLG00000006439 N 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
MXD4 Homo sapiens ENSG00000123933 N 0.000
MXD4 Procavia capensis ENSPCAG00000014133 N 0.000
MXD4 Loxodonta africana ENSLAFG00000026709 N 0.000
MXD4 Gorilla gorilla ENSGGOG00000000747 N 0.000
MXD4 Gallus gallus ENSGALG00000015688 N 0.000
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N 0.000
MXD4 Pan troglodytes ENSPTRG00000015844 N 0.000
MXD4 Pteropus vampyrus ENSPVAG00000011169 N 0.000
Mxd4 Rattus norvegicus ENSRNOG00000015033 N 0.000
MXD4 Sus scrofa ENSSSCG00000008687 N 0.000
mxd4.L Xenopus laevis XB-GENE-6252709 N 0.000
mxd4.S Xenopus laevis XB-GENE-6256011 N 0.000
Ogr18275 Ophisaurus gracilis Ogr18275 N 0.000
Pvit_14853 Pogona vitticeps Pvit_14853 N 0.000
Tal_R007717 Tyto alba Tal_R007717 N 0.000