Sb06g019040 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb06g019040 T256077_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.958 0.958
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.812 0.812
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.812 0.812
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.771 0.771
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.771 0.771
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.771 0.771
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.771 0.771
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.750 0.750
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.750 0.750
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.750 0.750
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.750 0.750
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.729 0.729
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.729 0.729
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.729 0.729
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.729 0.729
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.729 0.729
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g019040.1 MADS box 10 57

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

990 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000584 Aedes aegypti AAEL000584 I
AAH89283 Xenopus laevis AAH89283 I
AALB000575 Anopheles albimanus AALB000575 I
Aan_R015288 Calypte anna Aan_R015288 I
AARA003819 Anopheles arabiensis AARA003819 I
AATE001130 Anopheles atroparvus AATE001130 I
ACEP21454 Atta cephalotes ACEP21454 I
ACHR007072 Anopheles christyi ACHR007072 I
ACUA028385 Anopheles culicifacies ACUA028385 I
ACYPI005554 Acyrthosiphon pisum ACYPI005554 I
ADAC008955 Anopheles darlingi ADAC008955 I
ADIR009343 Anopheles dirus ADIR009343 I
AEPI010098 Anopheles epiroticus AEPI010098 I
AFAF007475 Anopheles farauti AFAF007475 I
Afo_R002185 Aptenodytes forsteri Afo_R002185 I
AFUN010751 Anopheles funestus AFUN010751 I
AGAP009957 Anopheles gambiae AGAP009957 I
AMAM014144 Anopheles maculatus AMAM014144 I
AMEM014430 Anopheles merus AMEM014430 I
AMIN006772 Anopheles minimus AMIN006772 I
AQUA000097 Anopheles quadriannulatus AQUA000097 I
ASIS006154 Anopheles sinensis ASIS006154 I
ASIS009345 Anopheles sinensis ASIS009345 I
ASTEI04016 Anopheles stephensi ASTEI04016 I
BXY_0079600 Bursaphelenchus xylophilus BXY_0079600 I
CapteG20216 Capitella teleta CapteG20216 I
CBG16696 Caenorhabditis briggsae CBG16696 I
CBN04047 Caenorhabditis brenneri CBN04047 I
Cflo_02448--XP_391958.3_APIME Camponotus floridanus Cflo_02448--XP_391958.3_APIME I
CGI_10010085 Crassostrea gigas CGI_10010085 I
CJA18228 Caenorhabditis japonica CJA18228 I
CPIJ007851 Culex quinquefasciatus CPIJ007851 I
CpipJ_CPIJ007851 Culex pipiens CpipJ_CPIJ007851 I
CRE00065 Caenorhabditis remanei CRE00065 I
D917_03348 Trichinella nativa D917_03348 I
D918_08135 Trichuris suis D918_08135 I
DAPPUDRAFT_37759 Daphnia pulex DAPPUDRAFT_37759 I
EFV55488 Trichinella spiralis EFV55488 I
ENSAMEG00000011029 Ailuropoda melanoleuca ENSAMEG00000011029 I
ENSAMEG00000012648 Ailuropoda melanoleuca ENSAMEG00000012648 I
ENSAMXG00000011793 Astyanax mexicanus ENSAMXG00000011793 I
ENSAMXG00000018376 Astyanax mexicanus ENSAMXG00000018376 I
ENSAMXG00000025924 Astyanax mexicanus ENSAMXG00000025924 I
ENSAMXG00000025991 Astyanax mexicanus ENSAMXG00000025991 I
ENSAMXG00000026046 Astyanax mexicanus ENSAMXG00000026046 I
ENSAPLG00000000646 Anas platyrhynchos ENSAPLG00000000646 I
ENSAPLG00000000828 Anas platyrhynchos ENSAPLG00000000828 I
ENSAPLG00000010582 Anas platyrhynchos ENSAPLG00000010582 I
ENSCJAG00000022387 Callithrix jacchus ENSCJAG00000022387 I
ENSCPOG00000022456 Cavia porcellus ENSCPOG00000022456 I
ENSCSAG00000000291 Chlorocebus sabaeus ENSCSAG00000000291 I
ENSCSAG00000017460 Chlorocebus sabaeus ENSCSAG00000017460 I
ENSCSAG00000018883 Chlorocebus sabaeus ENSCSAG00000018883 I
ENSCSAG00000018918 Chlorocebus sabaeus ENSCSAG00000018918 I
ENSFALG00000011093 Ficedula albicollis ENSFALG00000011093 I
ENSFALG00000014199 Ficedula albicollis ENSFALG00000014199 I
ENSFALG00000014201 Ficedula albicollis ENSFALG00000014201 I
ENSFALG00000014383 Ficedula albicollis ENSFALG00000014383 I
ENSGALG00000008848 Gallus gallus ENSGALG00000008848 I
ENSGMOG00000000863 Gadus morhua ENSGMOG00000000863 I
ENSGMOG00000018365 Gadus morhua ENSGMOG00000018365 I
ENSGMOG00000019777 Gadus morhua ENSGMOG00000019777 I
ENSGMOG00000020606 Gadus morhua ENSGMOG00000020606 I
ENSLACG00000004841 Latimeria chalumnae ENSLACG00000004841 I
ENSLACG00000005331 Latimeria chalumnae ENSLACG00000005331 I
ENSLACG00000006560 Latimeria chalumnae ENSLACG00000006560 I
ENSLACG00000006644 Latimeria chalumnae ENSLACG00000006644 I
ENSLACG00000012047 Latimeria chalumnae ENSLACG00000012047 I
ENSLOCG00000014463 Lepisosteus oculatus ENSLOCG00000014463 I
ENSLOCG00000017346 Lepisosteus oculatus ENSLOCG00000017346 I
ENSLOCG00000017402 Lepisosteus oculatus ENSLOCG00000017402 I
ENSLOCG00000017799 Lepisosteus oculatus ENSLOCG00000017799 I
ENSMEUG00000006246 Macropus eugenii ENSMEUG00000006246 I
ENSMMUG00000000675 Macaca mulatta ENSMMUG00000000675 I
ENSMODG00000013932 Monodelphis domestica ENSMODG00000013932 I
ENSMPUG00000001759 Mustela putorius furo ENSMPUG00000001759 I
ENSMPUG00000018663 Mustela putorius furo ENSMPUG00000018663 I
ENSNLEG00000018830 Nomascus leucogenys ENSNLEG00000018830 I
ENSONIG00000000602 Oreochromis niloticus ENSONIG00000000602 I
ENSP00000372547-D4 Bos grunniens ENSP00000372547-D4 I
ENSPANG00000014880 Papio anubis ENSPANG00000014880 I
ENSPFOG00000012387 Poecilia formosa ENSPFOG00000012387 I
ENSPPYG00000020784 Pongo abelii ENSPPYG00000020784 I
ENSPSIG00000000846 Pelodiscus sinensis ENSPSIG00000000846 I
ENSSHAG00000007719 Sarcophilus harrisii ENSSHAG00000007719 I
ENSSTOG00000025068 Ictidomys tridecemlineatus ENSSTOG00000025068 I
ENSXMAG00000008210 Xiphophorus maculatus ENSXMAG00000008210 I
GA14769 Drosophila pseudoobscura FBgn0074796 I
GB50686 Apis mellifera GB50686 I
GD23563 Drosophila simulans FBgn0194941 I
GE18794 Drosophila yakuba FBgn0236180 I
GF15546 Drosophila ananassae FBgn0092571 I
Gfo_R003513 Geospiza fortis Gfo_R003513 I
GG25303 Drosophila erecta FBgn0117424 I
GH13864 Drosophila grimshawi FBgn0121340 I
GI17415 Drosophila mojavensis FBgn0140159 I
GJ18351 Drosophila virilis FBgn0205510 I
GK24531 Drosophila willistoni FBgn0226491 I
GL25564 Drosophila persimilis FBgn0163148 I
GM17140 Drosophila sechellia FBgn0172051 I
HHAL004700-PA Halyomorpha halys HHAL004700-PA I
HMEL011417 Heliconius melpomene HMEL011417 I
Hsal_06119--XP_391958.3_APIME Harpegnathos saltator Hsal_06119--XP_391958.3_APIME I
ISCW023383 Ixodes scapularis ISCW023383 I
KGM_02459 Danaus plexippus KGM_02459 I
L798_00241 Zootermopsis nevadensis L798_00241 I
LCUP010052 Lucilia cuprina LCUP010052 I
LDEC008700 Leptinotarsa decemlineata LDEC008700 I
LLOJ002737 Lutzomyia longipalpis LLOJ002737 I
LLOJ004624 Lutzomyia longipalpis LLOJ004624 I
MDOA009271 Musca domestica MDOA009271 I
PHUM462920 Pediculus humanus PHUM462920 I
PPAI009042 Phlebotomus papatasi PPAI009042 I
PXEA_0002181501 Protopolystoma xenopodis PXEA_0002181501 I
RPRC011493 Rhodnius prolixus RPRC011493 I
Sakowv30007791m.g Saccoglossus kowalevskii Sakowv30007791m.g I
SINV26083 Solenopsis invicta SINV26083 I
SMAR002456 Strigamia maritima SMAR002456 I
SMAR011344 Strigamia maritima SMAR011344 I
SOX1 Bos taurus ENSBTAG00000038272 I
SOX1 Canis familiaris ENSCAFG00000006137 I
SOX1 Callithrix jacchus ENSCJAG00000032566 I
SOX1 Dasypus novemcinctus ENSDNOG00000023758 I
SOX1 Homo sapiens ENSG00000182968 I
SOX1 Gorilla gorilla ENSGGOG00000027572 I
SOX1 Monodelphis domestica ENSMODG00000004267 I
Sox1 Mus musculus ENSMUSG00000096014 D
SOX14 Cavia porcellus ENSCPOG00000026272 I
sox14 Danio rerio ENSDARG00000070929 I
SOX14 Echinops telfairi ENSETEG00000018576 I
SOX14 Homo sapiens ENSG00000168875 D
SOX14 Gorilla gorilla ENSGGOG00000013878 I
SOX14 Loxodonta africana ENSLAFG00000003447 I
SOX14 Microcebus murinus ENSMICG00000013774 I
SOX14 Macaca mulatta ENSMMUG00000011780 I
SOX14 Monodelphis domestica ENSMODG00000024983 I
Sox14 Mus musculus ENSMUSG00000053747 D
sox19a Danio rerio ENSDARG00000010770 I
sox19a Gasterosteus aculeatus ENSGACG00000020077 I
sox19a Takifugu rubripes ENSTRUG00000005238 I
sox19b Danio rerio ENSDARG00000040266 I
sox1a Danio rerio ENSDARG00000069866 I
sox1b Danio rerio ENSDARG00000008131 I
sox1b Gasterosteus aculeatus ENSGACG00000002889 I
SOX2 Bos taurus ENSBTAG00000011598 I
SOX2 Canis familiaris ENSCAFG00000011642 I
SOX2 Callithrix jacchus ENSCJAG00000008401 I
sox2 Danio rerio ENSDARG00000070913 I
SOX2 Dasypus novemcinctus ENSDNOG00000019903 I
Sox2 Dipodomys ordii ENSDORG00000007481 I
SOX2 Homo sapiens ENSG00000181449 D
sox2 Gasterosteus aculeatus ENSGACG00000006100 I
SOX2 Myotis lucifugus ENSMLUG00000013015 I
SOX2 Monodelphis domestica ENSMODG00000021292 I
Sox2 Mus musculus ENSMUSG00000074637 D
SOX3 Canis familiaris ENSCAFG00000019026 I
SOX3 Homo sapiens ENSG00000134595 D
SOX3 Gorilla gorilla ENSGGOG00000008130 I
SOX3 Loxodonta africana ENSLAFG00000030155 I
SOX3 Myotis lucifugus ENSMLUG00000000946 I
SOX3 Macaca mulatta ENSMMUG00000013179 I
Sox3 Mus musculus ENSMUSG00000045179 D
SOX3 Oryctolagus cuniculus ENSOCUG00000016779 I
SOX3 Otolemur garnettii ENSOGAG00000025781 I
SOX3 Procavia capensis ENSPCAG00000009165 I
SOX3 Sus scrofa ENSSSCG00000022501 I
SOX3 Taeniopygia guttata ENSTGUG00000006268 I
sox3.S Xenopus laevis XB-GENE-484819 I
SoxN Drosophila melanogaster FBgn0029123 D
TC014065 Tribolium castaneum TC014065 I
tetur02g12030 Tetranychus urticae tetur02g12030 I
tetur02g12070 Tetranychus urticae tetur02g12070 I
TMUE_s0060001100 Trichuris muris TMUE_s0060001100 I
TTRE_0000265401 Trichuris trichiura TTRE_0000265401 I
XP_002154370.1 Hydra magnipapillata XP_002154370.1 I
YQE_04035 Dendroctonus ponderosae YQE_04035 I