UM01224 (Ustilago maydis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 UM01224 T256732_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.854 0.854
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.812 0.812
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.812 0.812
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.812 0.812
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.812 0.812
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.812 0.812
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.812 0.812
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.771 0.771
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.771 0.771
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.771 0.771
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.771 0.771
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.771 0.771
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.771 0.771
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.771 0.771
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.771 0.771
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.771 0.771
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.771 0.771
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.771 0.771
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.771 0.771
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.771 0.771
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.771 0.771
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.771 0.771
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.771 0.771
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.771 0.771
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.771 0.771
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.771 0.771
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.771 0.771
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.771 0.771
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.771 0.771
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.729 0.729
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
UM01224P0 MADS box 107 154

Links

Other MADS box family TFs
Other Ustilago maydis TFs

456 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL002049 Aedes aegypti AAEL002049 N 0.000
AALB005830 Anopheles albimanus AALB005830 N 0.000
AARA005744 Anopheles arabiensis AARA005744 N 0.000
AATE014920 Anopheles atroparvus AATE014920 N 0.000
ACHR008375 Anopheles christyi ACHR008375 N 0.000
ACOM038868 Anopheles coluzzii ACOM038868 N 0.000
ACUA002672 Anopheles culicifacies ACUA002672 N 0.000
ADAC003147 Anopheles darlingi ADAC003147 N 0.000
ADIR006896 Anopheles dirus ADIR006896 N 0.000
AEPI006442 Anopheles epiroticus AEPI006442 N 0.000
AFAF013492 Anopheles farauti AFAF013492 N 0.000
AFUN004883 Anopheles funestus AFUN004883 N 0.000
AMEC018494 Anopheles melas AMEC018494 N 0.000
AMEM006050 Anopheles merus AMEM006050 N 0.000
AMIN010178 Anopheles minimus AMIN010178 N 0.000
AQUA011207 Anopheles quadriannulatus AQUA011207 N 0.000
ASIS018029 Anopheles sinensis ASIS018029 N 0.000
ASTEI02247 Anopheles stephensi ASTEI02247 N 0.000
Cflo_03663--XP_001121441.1_APIME Camponotus floridanus Cflo_03663--XP_001121441.1_APIME N 0.000
CLEC000189 Cimex lectularius CLEC000189 N 0.000
CPIJ014938 Culex quinquefasciatus CPIJ014938 N 0.000
CpipJ_CPIJ014938 Culex pipiens CpipJ_CPIJ014938 N 0.000
CYC Anopheles gambiae AGAP005655 N 0.000
DAPPUDRAFT_346995 Daphnia pulex DAPPUDRAFT_346995 N 0.000
GA21284 Drosophila pseudoobscura FBgn0081272 N 0.000
GB43953 Apis mellifera GB43953 N 0.000
GF10846 Drosophila ananassae FBgn0087886 N 0.000
GH16911 Drosophila grimshawi FBgn0124382 N 0.000
GJ14003 Drosophila virilis FBgn0201221 N 0.000
GL15678 Drosophila persimilis FBgn0153282 N 0.000
HMEL011026 Heliconius melpomene HMEL011026 N 0.000
Hsal_04208--XP_001121441.1_APIME Harpegnathos saltator Hsal_04208--XP_001121441.1_APIME N 0.000
L798_13398 Zootermopsis nevadensis L798_13398 N 0.000
LCUP007672 Lucilia cuprina LCUP007672 N 0.000
LDEC004019 Leptinotarsa decemlineata LDEC004019 N 0.000
MDOA007541 Musca domestica MDOA007541 N 0.000
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I 0.000
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I 0.000
NV13263 Nasonia vitripennis NV13263 N 0.000
PPAI010392 Phlebotomus papatasi PPAI010392 N 0.000
RPRC000556 Rhodnius prolixus RPRC000556 N 0.000
SINV21276 Solenopsis invicta SINV21276 N 0.000
TC002494 Tribolium castaneum TC002494 N 0.000
YQE_03758 Dendroctonus ponderosae YQE_03758 N 0.000