Afo_R000461 (Aptenodytes forsteri)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Afo_R000461 T256868_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R000461 MADS box 1 27

Links

Other MADS box family TFs
Other Aptenodytes forsteri TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003374 Calypte anna Aan_R003374 N 0.000
Afo_R009641 Aptenodytes forsteri Afo_R009641 N 0.000
Brh_R002111 Buceros rhinoceros Brh_R002111 N 0.000
ENSAMEG00000009725 Ailuropoda melanoleuca ENSAMEG00000009725 N 0.000
ENSAMXG00000006281 Astyanax mexicanus ENSAMXG00000006281 N 0.000
ENSAPLG00000013219 Anas platyrhynchos ENSAPLG00000013219 N 0.000
ENSBTAP00000009552-D1 Bos grunniens ENSBTAP00000009552-D1 N 0.000
ENSCSAG00000004832 Chlorocebus sabaeus ENSCSAG00000004832 N 0.000
ENSFALG00000000233 Ficedula albicollis ENSFALG00000000233 N 0.000
ENSGALG00000004510 Gallus gallus ENSGALG00000004510 N 0.000
ENSGMOG00000000302 Gadus morhua ENSGMOG00000000302 N 0.000
ENSLOCG00000005719 Lepisosteus oculatus ENSLOCG00000005719 N 0.000
ENSMEUG00000009907 Macropus eugenii ENSMEUG00000009907 N 0.000
ENSMMUG00000008645 Macaca mulatta ENSMMUG00000008645 N 0.000
ENSMPUG00000007989 Mustela putorius furo ENSMPUG00000007989 N 0.000
ENSNLEG00000007605 Nomascus leucogenys ENSNLEG00000007605 N 0.000
ENSOARG00000004111 Ovis aries ENSOARG00000004111 N 0.000
ENSONIG00000003511 Oreochromis niloticus ENSONIG00000003511 N 0.000
ENSP00000347730 Macaca fascicularis ENSP00000347730 N 0.000
ENSPANG00000016643 Papio anubis ENSPANG00000016643 N 0.000
ENSPFOG00000011945 Poecilia formosa ENSPFOG00000011945 N 0.000
ENSPPYG00000009811 Pongo abelii ENSPPYG00000009811 N 0.000
ENSPSIG00000007065 Pelodiscus sinensis ENSPSIG00000007065 N 0.000
ENSSHAG00000013353 Sarcophilus harrisii ENSSHAG00000013353 N 0.000
ENSXMAG00000000995 Xiphophorus maculatus ENSXMAG00000000995 N 0.000
Gfo_R015099 Geospiza fortis Gfo_R015099 N 0.000
Pvit_19178 Pogona vitticeps Pvit_19178 N 0.000
Zfp536 Rattus norvegicus ENSRNOG00000014163 N 0.000
Zfp536 Mus musculus ENSMUSG00000043456 N 0.000
ZNF536 Loxodonta africana ENSLAFG00000017731 N 0.000
znf536 Gasterosteus aculeatus ENSGACG00000014234 N 0.000
ZNF536 Homo sapiens ENSG00000198597 N 0.000
ZNF536 Gorilla gorilla ENSGGOG00000013640 N 0.000
ZNF536 Bos taurus ENSBTAG00000007262 N 0.000
ZNF536 Canis familiaris ENSCAFG00000007601 N 0.000
ZNF536 Callithrix jacchus ENSCJAG00000018365 N 0.000
ZNF536 Cavia porcellus ENSCPOG00000008744 N 0.000
ZNF536 Felis catus ENSFCAG00000014303 N 0.000
ZNF536 Tursiops truncatus ENSTTRG00000009847 N 0.000
znf536 Takifugu rubripes ENSTRUG00000005430 N 0.000
znf536 Tetraodon nigroviridis ENSTNIG00000002948 N 0.000
ZNF536 Taeniopygia guttata ENSTGUG00000009013 N 0.000
ZNF536 Tupaia belangeri ENSTBEG00000002295 N 0.000
ZNF536 Sus scrofa ENSSSCG00000029234 N 0.000
ZNF536 Pan troglodytes ENSPTRG00000010786 N 0.000
ZNF536 Erinaceus europaeus ENSEEUG00000009769 N 0.000
ZNF536 Equus caballus ENSECAG00000013732 N 0.000
ZNF536 Meleagris gallopavo ENSMGAG00000005440 N 0.000
ZNF536 Dasypus novemcinctus ENSDNOG00000008027 N 0.000
ZNF536 Ochotona princeps ENSOPRG00000009314 N 0.000
ZNF536 Monodelphis domestica ENSMODG00000012653 N 0.000
ZNF536 Otolemur garnettii ENSOGAG00000003997 N 0.000
ZNF536 Oryctolagus cuniculus ENSOCUG00000022631 N 0.000
znf536 Danio rerio ENSDARG00000103648 N 0.000
ZNF536 Ornithorhynchus anatinus ENSOANG00000002991 N 0.000
ZNF536 Anolis carolinensis ENSACAG00000012257 N 0.000