estExt_fgenesh1_pm.C_30002 (Cochliobolus heterostrophus C5)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_fgenesh1_pm.C_30002 T257328_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_30002 MADS box 10 57

Links

Other MADS box family TFs
Other Cochliobolus heterostrophus C5 TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BDDG_04409 Blastomyces dermatitidis BDDG_04409 N
CIMG_02426 Coccidioides immitis CIMG_02426 N
CPC735_040530 Coccidioides posadasii CPC735_040530 N
estExt_Genewise1Plus.C_150467 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150467 N
HMPREF1541_06758 Cyphellophora europaea HMPREF1541_06758 N
PABG_03466 Paracoccidioides brasiliensis PABG_03466 N
SETTUDRAFT_27878 Setosphaeria turcica SETTUDRAFT_27878 N