fgenesh1_pg.sca_1_chr1_3_0001184 (Nectria haematococca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 fgenesh1_pg.sca_1_chr1_3_0001184 T257347_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.708 0.708
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.sca_1_chr1_3_0001184 MADS box 10 57

Links

Other MADS box family TFs
Other Nectria haematococca TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003158 Aedes aegypti AAEL003158 I 0.000
AALB003384 Anopheles albimanus AALB003384 I 0.000
AARA001486 Anopheles arabiensis AARA001486 I 0.000
AATE008808 Anopheles atroparvus AATE008808 I 0.000
ACOM028352 Anopheles coluzzii ACOM028352 I 0.000
ACUA003130 Anopheles culicifacies ACUA003130 I 0.000
ACYPI28321 Acyrthosiphon pisum ACYPI28321 I 0.000
ADAC003085 Anopheles darlingi ADAC003085 I 0.000
ADIR008273 Anopheles dirus ADIR008273 I 0.000
AEPI009779 Anopheles epiroticus AEPI009779 I 0.000
AFAF007403 Anopheles farauti AFAF007403 I 0.000
AFUN002303 Anopheles funestus AFUN002303 I 0.000
AGAP003406 Anopheles gambiae AGAP003406 I 0.000
AMEC009026 Anopheles melas AMEC009026 I 0.000
AMEM013111 Anopheles merus AMEM013111 I 0.000
AMIN003870 Anopheles minimus AMIN003870 I 0.000
AQUA010265 Anopheles quadriannulatus AQUA010265 I 0.000
ASIS007877 Anopheles sinensis ASIS007877 I 0.000
ASTEI03376 Anopheles stephensi ASTEI03376 I 0.000
A_06265 Schistosoma haematobium A_06265 I 0.000
CAD25284 Encephalitozoon cuniculi CAD25284 D 0.000
CG15696 Drosophila melanogaster FBgn0038833 D 0.000
CPIJ003723 Culex quinquefasciatus CPIJ003723 I 0.000
CpipJ_CPIJ003723 Culex pipiens CpipJ_CPIJ003723 I 0.000
D915_03631 Fasciola hepatica D915_03631 I 0.000
EHEL_040890 Encephalitozoon hellem EHEL_040890 I 0.000
Eint_040940 Encephalitozoon intestinalis Eint_040940 I 0.000
ENSCAFG00000023214 Canis familiaris ENSCAFG00000023214 I 0.000
EROM_040930 Encephalitozoon romaleae EROM_040930 I 0.000
Esx1 Mus musculus ENSMUSG00000023443 D 0.000
Esx1 Rattus norvegicus ENSRNOG00000048011 I 0.000
e_gw.35.232.1 Branchiostoma floridae e_gw.35.232.1 I 0.000
GA13896 Drosophila pseudoobscura FBgn0073928 I 0.000
GB43703 Apis mellifera GB43703 I 0.000
GE25692 Drosophila yakuba FBgn0084486 I 0.000
GF17994 Drosophila ananassae FBgn0095012 I 0.000
GG24188 Drosophila erecta FBgn0085045 I 0.000
GH15916 Drosophila grimshawi FBgn0123387 I 0.000
GJ22956 Drosophila virilis FBgn0210059 I 0.000
GK22474 Drosophila willistoni FBgn0224451 I 0.000
GL24283 Drosophila persimilis FBgn0161873 I 0.000
GM23140 Drosophila sechellia FBgn0178008 I 0.000
gw.35.233.1 Branchiostoma floridae gw.35.233.1 I 0.000
LCUP001362 Lucilia cuprina LCUP001362 I 0.000
LLOJ009601 Lutzomyia longipalpis LLOJ009601 I 0.000
LotgiG169884 Lottia gigantea LotgiG169884 I 0.000
MDOA010523 Musca domestica MDOA010523 I 0.000
MESCA004778 Megaselia scalaris MESCA004778 I 0.000
ML021120a Mnemiopsis leidyi ML021120a I 0.000
NEMVEDRAFT_v1g80394 Nematostella vectensis NEMVEDRAFT_v1g80394 D 0.000
Smp_000075 Schistosoma mansoni Smp_000075 I 0.000
TC015928 Tribolium castaneum TC015928 I 0.000
tetur05g02800 Tetranychus urticae tetur05g02800 I 0.000
TriadG51739 Trichoplax adhaerens TriadG51739 I 0.000
YQE_12606 Dendroctonus ponderosae YQE_12606 I 0.000