Sakowv30019106m.g (Saccoglossus kowalevskii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Sakowv30019106m.g T257482_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.979 0.979
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.979 0.979
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.979 0.979
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.979 0.979
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.979 0.979
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.979 0.979
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.979 0.979
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.979 0.979
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.979 0.979
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.979 0.979
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.979 0.979
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.979 0.979
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.979 0.979
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.979 0.979
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.979 0.979
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.979 0.979
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.979 0.979
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.979 0.979
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.979 0.979
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.979 0.979
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.979 0.979
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.979 0.979
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.979 0.979
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.979 0.979
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.917 0.917
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.875 0.875
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.792 0.792
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.792 0.792
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.792 0.792
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.792 0.792
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.792 0.792
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23926230_peptide MADS box 110 157
23926231_peptide MADS box 110 157
23926232_peptide MADS box 110 157
23926233_peptide MADS box 110 157

Links

Other MADS box family TFs
Other Saccoglossus kowalevskii TFs

548 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011188 Aedes aegypti AAEL011188 N
AAEL014129 Aedes aegypti AAEL014129 N
AAEL015073 Aedes aegypti AAEL015073 N
AALB000412 Anopheles albimanus AALB000412 N
AALB000416 Anopheles albimanus AALB000416 I
AALB000419 Anopheles albimanus AALB000419 N
AALB004779 Anopheles albimanus AALB004779 N
AALB008495 Anopheles albimanus AALB008495 I
AARA000518 Anopheles arabiensis AARA000518 I
AARA011011 Anopheles arabiensis AARA011011 N
AARA011014 Anopheles arabiensis AARA011014 I
AARA011018 Anopheles arabiensis AARA011018 N
AATE006365 Anopheles atroparvus AATE006365 N
AATE013760 Anopheles atroparvus AATE013760 I
AATE017887 Anopheles atroparvus AATE017887 N
ACEP16055 Atta cephalotes ACEP16055 N
ACEP16057 Atta cephalotes ACEP16057 N
ACEP16104 Atta cephalotes ACEP16104 N
ACEP18439 Atta cephalotes ACEP18439 N
ACEP18779 Atta cephalotes ACEP18779 N
ACEP25260 Atta cephalotes ACEP25260 N
ACHR005872 Anopheles christyi ACHR005872 N
ACHR009192 Anopheles christyi ACHR009192 I
ACOM023902 Anopheles coluzzii ACOM023902 N
ACOM023916 Anopheles coluzzii ACOM023916 I
ACOM023939 Anopheles coluzzii ACOM023939 N
ACOM024986 Anopheles coluzzii ACOM024986 N
ACUA008697 Anopheles culicifacies ACUA008697 I
ACUA016860 Anopheles culicifacies ACUA016860 N
ACUA020382 Anopheles culicifacies ACUA020382 I
ACUA023844 Anopheles culicifacies ACUA023844 N
ADAC010175 Anopheles darlingi ADAC010175 N
ADAC010219 Anopheles darlingi ADAC010219 N
ADIR000205 Anopheles dirus ADIR000205 I
ADIR010886 Anopheles dirus ADIR010886 N
ADIR010890 Anopheles dirus ADIR010890 I
ADIR010894 Anopheles dirus ADIR010894 N
AEPI001839 Anopheles epiroticus AEPI001839 N
AEPI001842 Anopheles epiroticus AEPI001842 I
AEPI004513 Anopheles epiroticus AEPI004513 I
AFAF006342 Anopheles farauti AFAF006342 I
AFAF008895 Anopheles farauti AFAF008895 I
AFAF009935 Anopheles farauti AFAF009935 N
AFAF009954 Anopheles farauti AFAF009954 N
AFAF014429 Anopheles farauti AFAF014429 N
AFAF020534 Anopheles farauti AFAF020534 N
AFUN001006 Anopheles funestus AFUN001006 I
AFUN010565 Anopheles funestus AFUN010565 N
AFUN010568 Anopheles funestus AFUN010568 I
AFUN010572 Anopheles funestus AFUN010572 N
AGAP008567 Anopheles gambiae AGAP008567 I
AMAM002835 Anopheles maculatus AMAM002835 I
AMAM007431 Anopheles maculatus AMAM007431 N
AMAM010638 Anopheles maculatus AMAM010638 I
AMAM018266 Anopheles maculatus AMAM018266 N
AMEC006545 Anopheles melas AMEC006545 N
AMEC008441 Anopheles melas AMEC008441 N
AMEC012505 Anopheles melas AMEC012505 I
AMEC014683 Anopheles melas AMEC014683 I
AMEC017817 Anopheles melas AMEC017817 I
AMEM000859 Anopheles merus AMEM000859 N
AMEM004241 Anopheles merus AMEM004241 N
AMEM005379 Anopheles merus AMEM005379 I
AMEM006552 Anopheles merus AMEM006552 N
AMEM009812 Anopheles merus AMEM009812 N
AMEM014259 Anopheles merus AMEM014259 N
AMIN000989 Anopheles minimus AMIN000989 N
AMIN000992 Anopheles minimus AMIN000992 I
AMIN000996 Anopheles minimus AMIN000996 N
AMIN008751 Anopheles minimus AMIN008751 I
ANCCAN_17995 Ancylostoma caninum ANCCAN_17995 N
ANCDUO_08930 Ancylostoma duodenale ANCDUO_08930 N
AQUA000252 Anopheles quadriannulatus AQUA000252 N
AQUA000256 Anopheles quadriannulatus AQUA000256 I
AQUA000259 Anopheles quadriannulatus AQUA000259 N
AQUA010988 Anopheles quadriannulatus AQUA010988 N
ASIM_0000332801 Anisakis simplex ASIM_0000332801 N
ASIM_0000883501 Anisakis simplex ASIM_0000883501 N
ASIM_0001369201 Anisakis simplex ASIM_0001369201 N
ASIS004860 Anopheles sinensis ASIS004860 N
ASIS022129 Anopheles sinensis ASIS022129 N
ASIS023746 Anopheles sinensis ASIS023746 N
ASTEI05182 Anopheles stephensi ASTEI05182 N
ASTEI05184 Anopheles stephensi ASTEI05184 I
ASTEI05186 Anopheles stephensi ASTEI05186 I
ASTEI08593 Anopheles stephensi ASTEI08593 I
augustus_masked-nMf.1.1.scaf00847-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00847-processed-gene-0.0 N
A_01376 Schistosoma haematobium A_01376 N
A_07251 Schistosoma haematobium A_07251 N
BAG86626 Xenopus laevis BAG86626 N
BGIBMGA002993 Bombyx mori BGIBMGA002993 N
BGIBMGA003172 Bombyx mori BGIBMGA003172 N
BGIBMGA012896 Bombyx mori BGIBMGA012896 N
BGLB008488 Biomphalaria glabrata BGLB008488 N
BGLB013266 Biomphalaria glabrata BGLB013266 N
BTMF_0000314701 Brugia timori BTMF_0000314701 N
BTMF_0001014001 Brugia timori BTMF_0001014001 N
BXY_1202100 Bursaphelenchus xylophilus BXY_1202100 N
CAA04813 Xenopus laevis CAA04813 N
CapteG199350 Capitella teleta CapteG199350 N
Cflo_07687--XP_001122560.1_APIME Camponotus floridanus Cflo_07687--XP_001122560.1_APIME N
CGI_10019141 Crassostrea gigas CGI_10019141 N
CGI_10019474 Crassostrea gigas CGI_10019474 N
CGOC_0001405301 Cylicostephanus goldi CGOC_0001405301 N
CLEC007093 Cimex lectularius CLEC007093 N
CLEC007100 Cimex lectularius CLEC007100 N
CPIJ000431 Culex quinquefasciatus CPIJ000431 N
CPIJ000719 Culex quinquefasciatus CPIJ000719 I
CPIJ007737 Culex quinquefasciatus CPIJ007737 N
CpipJ_CPIJ000431 Culex pipiens CpipJ_CPIJ000431 N
CpipJ_CPIJ000719 Culex pipiens CpipJ_CPIJ000719 I
D915_02168 Fasciola hepatica D915_02168 N
D915_09884 Fasciola hepatica D915_09884 N
D918_04294 Trichuris suis D918_04294 N
DICVIV_06159 Dictyocaulus viviparus DICVIV_06159 N
DME_0000913401 Dracunculus medinensis DME_0000913401 N
ECPE_0001424601 Echinostoma caproni ECPE_0001424601 N
EEL_0000193501 Elaeophora elaphi EEL_0000193501 N
EEL_0000897101 Elaeophora elaphi EEL_0000897101 N
ENSECAG00000002502 Equus caballus ENSECAG00000002502 I
ENSETEG00000015428 Echinops telfairi ENSETEG00000015428 I
ENSGACG00000000841 Gasterosteus aculeatus ENSGACG00000000841 N
ENSGMOG00000002691 Gadus morhua ENSGMOG00000002691 N
ENSGMOG00000010368 Gadus morhua ENSGMOG00000010368 N
ENSMEUG00000014480 Macropus eugenii ENSMEUG00000014480 I
ENSOANG00000002255 Ornithorhynchus anatinus ENSOANG00000002255 N
ENSOANG00000031362 Ornithorhynchus anatinus ENSOANG00000031362 I
ENSPMAG00000004017 Petromyzon marinus ENSPMAG00000004017 N
ENSPMAG00000006729 Petromyzon marinus ENSPMAG00000006729 N
ENSPMAG00000008021 Petromyzon marinus ENSPMAG00000008021 N
ENSSSCG00000006723 Sus scrofa ENSSSCG00000006723 I
ENSTGUG00000013354 Taeniopygia guttata ENSTGUG00000013354 I
EVEC_0000199201 Enterobius vermicularis EVEC_0000199201 N
GF19459 Drosophila ananassae FBgn0096468 N
Gfo_R000255 Geospiza fortis Gfo_R000255 I
GPUH_0000709501 Gongylonema pulchrum GPUH_0000709501 N
GPUH_0002107201 Gongylonema pulchrum GPUH_0002107201 N
Hba_09878 Heterorhabditis bacteriophora Hba_09878 N
HelroG183031 Helobdella robusta HelroG183031 N
HHAL002271-PA Halyomorpha halys HHAL002271-PA I
HHAL004081-PA Halyomorpha halys HHAL004081-PA N
HMEL012428 Heliconius melpomene HMEL012428 N
HPLM_0000022701 Haemonchus placei HPLM_0000022701 N
Hsal_04124--XP_001122560.1_APIME Harpegnathos saltator Hsal_04124--XP_001122560.1_APIME I
Hsal_09266--XP_394607.3_APIME Harpegnathos saltator Hsal_09266--XP_394607.3_APIME N
ISCW003118 Ixodes scapularis ISCW003118 N
ISCW019279 Ixodes scapularis ISCW019279 N
ISCW019282 Ixodes scapularis ISCW019282 N
ISCW019286 Ixodes scapularis ISCW019286 N
KGM_02027 Danaus plexippus KGM_02027 N
KGM_02039 Danaus plexippus KGM_02039 N
KGM_02695 Danaus plexippus KGM_02695 N
KGM_15498 Danaus plexippus KGM_15498 N
L798_05217 Zootermopsis nevadensis L798_05217 N
LCUP000435 Lucilia cuprina LCUP000435 N
LCUP008638 Lucilia cuprina LCUP008638 I
LDEC003104 Leptinotarsa decemlineata LDEC003104 N
LDEC010815 Leptinotarsa decemlineata LDEC010815 N
LDEC017550 Leptinotarsa decemlineata LDEC017550 N
LLOJ003747 Lutzomyia longipalpis LLOJ003747 N
LOAG_04396 Loa loa LOAG_04396 N
LOAG_12591 Loa loa LOAG_12591 N
LOAG_12746 Loa loa LOAG_12746 N
LotgiG176571 Lottia gigantea LotgiG176571 N
maker-nMf.1.1.scaf12105-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf12105-augustus-gene-0.3 N
MDOA013116 Musca domestica MDOA013116 N
MESCA003495 Megaselia scalaris MESCA003495 N
MhA1_Contig117.frz3.gene29 Meloidogyne hapla MhA1_Contig117.frz3.gene29 N
nAv.1.0.1.g04274 Acanthocheilonema viteae nAv.1.0.1.g04274 N
NBR_0000902501 Nippostrongylus brasiliensis NBR_0000902501 N
nDi.2.2.2.g06107 Dirofilaria immitis nDi.2.2.2.g06107 N
nDi.2.2.2.g08934 Dirofilaria immitis nDi.2.2.2.g08934 N
NECAME_12883 Necator americanus NECAME_12883 N
nLs.2.1.2.g03772 Litomosoides sigmodontis nLs.2.1.2.g03772 N
nLs.2.1.2.g07026 Litomosoides sigmodontis nLs.2.1.2.g07026 N
nOo.2.0.1.g05406 Onchocerca ochengi nOo.2.0.1.g05406 N
nOo.2.0.1.g09130 Onchocerca ochengi nOo.2.0.1.g09130 N
nRc.2.0.1.g29422 Romanomermis culicivorax nRc.2.0.1.g29422 N
Ocbimv22015178m.g Octopus bimaculoides Ocbimv22015178m.g N
Ocbimv22018978m.g Octopus bimaculoides Ocbimv22018978m.g N
OFLC_0000606701 Onchocerca flexuosa OFLC_0000606701 N
OFLC_0000825301 Onchocerca flexuosa OFLC_0000825301 N
OFLC_0001538801 Onchocerca flexuosa OFLC_0001538801 N
Ogr02070 Ophisaurus gracilis Ogr02070 N
Ogr11254 Ophisaurus gracilis Ogr11254 N
PEQ_0001376901 Parascaris equorum PEQ_0001376901 N
PHUM147980 Pediculus humanus PHUM147980 N
PHUM322720 Pediculus humanus PHUM322720 N
PPAI011117 Phlebotomus papatasi PPAI011117 N
PXEA_0001641201 Protopolystoma xenopodis PXEA_0001641201 N
PXEA_0002678801 Protopolystoma xenopodis PXEA_0002678801 N
PXEA_0002881901 Protopolystoma xenopodis PXEA_0002881901 N
RPRC001515 Rhodnius prolixus RPRC001515 N
RPRC001599 Rhodnius prolixus RPRC001599 N
RPRC009191 Rhodnius prolixus RPRC009191 N
SCUD_0000486401 Schistosoma curassoni SCUD_0000486401 N
SINV11021 Solenopsis invicta SINV11021 N
SINV17820 Solenopsis invicta SINV17820 I
Sjc_0021800 Schistosoma japonicum Sjc_0021800 N
Sjc_0063960 Schistosoma japonicum Sjc_0063960 N
SMTD_0000201501 Schistosoma mattheei SMTD_0000201501 N
SMTD_0000982301 Schistosoma mattheei SMTD_0000982301 N
SMUV_0000328201 Syphacia muris SMUV_0000328201 N
SNAPOd2T00004191001 Oikopleura dioica SNAPOd2T00004191001 N
SNAPOd2T00025690001 Oikopleura dioica SNAPOd2T00025690001 N
SPER_0000012201 Spirometra erinaceieuropaei SPER_0000012201 N
SPER_0000102601 Spirometra erinaceieuropaei SPER_0000102601 N
SPU_017169 Strongylocentrotus purpuratus SPU_017169 N
SPU_018391 Strongylocentrotus purpuratus SPU_018391 N
SROB_0000887301 Schistosoma rodhaini SROB_0000887301 N
SSLN_0001304401 Schistocephalus solidus SSLN_0001304401 N
SSLN_0001366501 Schistocephalus solidus SSLN_0001366501 N
SVE_1699100 Strongyloides venezuelensis SVE_1699100 N
SVUK_0001816001 Strongylus vulgaris SVUK_0001816001 N
TASK_0000235801 Taenia asiatica TASK_0000235801 N
Tbx15 Dipodomys ordii ENSDORG00000005620 N
Tbx15 Mus musculus ENSMUSG00000027868 I
TBX18 Gorilla gorilla ENSGGOG00000027982 I
TBX2 Homo sapiens ENSG00000121068 D
TBX22 Homo sapiens ENSG00000122145 D
TBX22 Sus scrofa ENSSSCG00000012449 I
Tbx5 Mus musculus ENSMUSG00000018263 D
TC013511 Tribolium castaneum TC013511 N
TCLT_0000604501 Thelazia callipaeda TCLT_0000604501 N
TCLT_0000808201 Thelazia callipaeda TCLT_0000808201 N
TCNE_0000688201 Toxocara canis TCNE_0000688201 N
TELCIR_17831 Teladorsagia circumcincta TELCIR_17831 N
TRE_0000996201 Trichobilharzia regenti TRE_0000996201 N
TsM_001062800 Taenia solium TsM_001062800 N
TTAC_0000422401 Hydatigera taeniaeformis TTAC_0000422401 N
TTAC_0001051901 Hydatigera taeniaeformis TTAC_0001051901 N
WUBG_02590 Wuchereria bancrofti WUBG_02590 N
WUBG_08214 Wuchereria bancrofti WUBG_08214 N
WUBG_09879 Wuchereria bancrofti WUBG_09879 N
YQE_06267 Dendroctonus ponderosae YQE_06267 N
YQE_06271 Dendroctonus ponderosae YQE_06271 N