Carubv10015354m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10015354m.g T257776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015354m MADS box 16 62

Links

Other MADS box family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29940.m000398 Ricinus communis 29940.m000398 I 0.000
AMTR_s00101p00121930 Amborella trichopoda AMTR_s00101p00121930 I 0.000
Aquca_009_00077 Aquilegia coerulea Aquca_009_00077 I 0.000
BGIOSGA026248 Oryza indica BGIOSGA026248 I 0.000
Bo4g012880 Brassica oleracea Bo4g012880 I 0.000
Bo4g190610 Brassica oleracea Bo4g190610 I 0.000
Bostr.9345s0037 Boechera stricta Bostr.9345s0037 I 0.000
Bra016959 Brassica rapa Bra016959 I 0.000
Bra023224 Brassica rapa Bra023224 I 0.000
Bra034147 Brassica rapa Bra034147 I 0.000
BRADI1G19702 Brachypodium distachyon BRADI1G19702 I 0.000
BRADI2G25400 Brachypodium distachyon BRADI2G25400 I 0.000
BZIP17 Arabidopsis thaliana AT2G40950 D 0.000
BZIP17 Arabidopsis lyrata scaffold_402899.1 I 0.000
BZIP49 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001722 I 0.000
BZIP49 Arabidopsis thaliana AT3G56660 I 0.000
BZIP60 Oryza sativa OS07G0644100 I 0.000
Cagra.1642s0060 Capsella grandiflora Cagra.1642s0060 I 0.000
Carubv10022722m.g Capsella rubella Carubv10022722m.g I 0.000
cassava24522.valid.m1 Manihot esculenta cassava24522.valid.m1 I 0.000
cassava31134.valid.m1 Manihot esculenta cassava31134.valid.m1 I 0.000
Ca_08103 Cicer arietinum Ca_08103 I 0.000
chr1.CM0269.100.nd Lotus japonicus chr1.CM0269.100.nd I 0.000
Ciclev10011169m.g Citrus clementina Ciclev10011169m.g I 0.000
Cla017717 Citrullus lanatus Cla017717 I 0.000
Cucsa.337510 Cucumis sativus Cucsa.337510 I 0.000
Eucgr.A02199 Eucalyptus grandis Eucgr.A02199 I 0.000
evm.TU.supercontig_92.68 Carica papaya evm.TU.supercontig_92.68 I 0.000
F775_09858 Aegilops tauschii F775_09858 I 0.000
gene03633-v1.0-hybrid Fragaria vesca gene03633-v1.0-hybrid I 0.000
GLYMA03G27865 Glycine max GLYMA03G27865 I 0.000
GLYMA19G30681 Glycine max GLYMA19G30681 I 0.000
Gorai.013G000800 Gossypium raimondii Gorai.013G000800 I 0.000
GSMUA_Achr10G01440_001 Musa acuminata GSMUA_Achr10G01440_001 I 0.000
GSMUA_Achr3G24960_001 Musa acuminata GSMUA_Achr3G24960_001 I 0.000
LPERR07G21050 Leersia perrieri LPERR07G21050 I 0.000
Lus10010440.g Linum usitatissimum Lus10010440.g I 0.000
Lus10012104.g Linum usitatissimum Lus10012104.g I 0.000
Lus10027290.g Linum usitatissimum Lus10027290.g I 0.000
Lus10038995.g Linum usitatissimum Lus10038995.g I 0.000
MDP0000138811 Malus domestica MDP0000138811 I 0.000
MDP0000180785 Malus domestica MDP0000180785 I 0.000
MDP0000270677 Malus domestica MDP0000270677 I 0.000
MDP0000299504 Malus domestica MDP0000299504 I 0.000
mgf002378m Mimulus guttatus mgf002378m I 0.000
mgf013640m Mimulus guttatus mgf013640m I 0.000
MLOC_58500 Hordeum vulgare MLOC_58500 I 0.000
MTR_7g088890 Medicago truncatula MTR_7g088890 I 0.000
OB07G29670 Oryza brachyantha OB07G29670 I 0.000
OBART07G24080 Oryza barthii OBART07G24080 I 0.000
OGLUM07G24220 Oryza glumaepatula OGLUM07G24220 I 0.000
OLONG_012651 Oryza longistaminata OLONG_012651 I 0.000
OMERI07G20490 Oryza meridionalis OMERI07G20490 I 0.000
ONIVA07G23980 Oryza nivara ONIVA07G23980 I 0.000
OPUNC07G22690 Oryza punctata OPUNC07G22690 I 0.000
orange1.1g035544m.g Citrus sinensis orange1.1g035544m.g I 0.000
ORGLA07G0187400 Oryza glaberrima ORGLA07G0187400 I 0.000
ORUFI07G25260 Oryza rufipogon ORUFI07G25260 I 0.000
Pavir.Ba00049 Panicum virgatum Pavir.Ba00049 I 0.000
Pavir.J09096 Panicum virgatum Pavir.J09096 I 0.000
PGSC0003DMG400007175 Solanum tuberosum PGSC0003DMG400007175 I 0.000
PK07115.1 Cannabis sativa PK07115.1 I 0.000
Pm016493 Prunus mume Pm016493 I 0.000
POPTR_0006s03300 Populus trichocarpa POPTR_0006s03300 I 0.000
POPTR_0016s03220 Populus trichocarpa POPTR_0016s03220 I 0.000
PRUPE_ppa002181mg Prunus persica PRUPE_ppa002181mg I 0.000
SapurV1A.0159s0210 Salix purpurea SapurV1A.0159s0210 I 0.000
SapurV1A.1072s0100 Salix purpurea SapurV1A.1072s0100 I 0.000
Sb02g041070 Sorghum bicolor Sb02g041070 I 0.000
Si029351m.g Setaria italica Si029351m.g I 0.000
Solyc10g078290.1 Solanum lycopersicum Solyc10g078290.1 I 0.000
TCM_023889 Theobroma cacao TCM_023889 I 0.000
Thhalv10005827m.g Eutrema salsugineum Thhalv10005827m.g I 0.000
Thhalv10016317m.g Eutrema salsugineum Thhalv10016317m.g I 0.000
Traes_2BS_169BEF991 Triticum aestivum Traes_2BS_169BEF991 I 0.000
Traes_2DS_5FA136FBB Triticum aestivum Traes_2DS_5FA136FBB I 0.000
TRIUR3_00571 Triticum urartu TRIUR3_00571 I 0.000
VIT_08s0040g00870 Vitis vinifera VIT_08s0040g00870 I 0.000