Gorai.007G058200 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.007G058200 T258422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.854 0.854
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.812 0.812
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.812 0.812
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.729 0.729
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.729 0.729
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.729 0.729
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.729 0.729
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.729 0.729
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.729 0.729
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.729 0.729
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.708 0.708
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G058200.1 MADS box 10 57

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

1015 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06543 Capronia coronata A1O1_06543 N 0.000
A1O3_09900 Capronia epimyces A1O3_09900 N 0.000
A1O5_05128 Cladophialophora psammophila A1O5_05128 N 0.000
A1O7_06461 Cladophialophora yegresii A1O7_06461 N 0.000
A1O9_11059 Exophiala aquamarina A1O9_11059 N 0.000
ACLA_051570 Aspergillus clavatus CADACLAG00004490 N 0.000
ACRE_019120 Acremonium chrysogenum ACRE_019120 N 0.000
AFUA_4G12570 Aspergillus fumigatus CADAFUAG00007816 N 0.000
AOL_s00173g126 Arthrobotrys oligospora AOL_s00173g126 N 0.000
ATEG_03142 Aspergillus terreus CADATEAG00010079 N 0.000
AUEXF2481DRAFT_142262 Aureobasidium subglaciale AUEXF2481DRAFT_142262 N 0.000
BBA_01980 Beauveria bassiana BBA_01980 N 0.000
Bcin11g03660 Botrytis cinerea Bcin11g03660 N 0.000
BDDG_01240 Blastomyces dermatitidis BDDG_01240 N 0.000
CADANGAG00000804 Aspergillus niger CADANGAG00000804 N 0.000
CCM_07119 Cordyceps militaris CCM_07119 N 0.000
CGGC5_12074 Colletotrichum gloeosporioides CGGC5_12074 N 0.000
CH063_11960 Colletotrichum higginsianum CH063_11960 N 0.000
CHGG_04978 Chaetomium globosum CHGG_04978 N 0.000
CIMG_07019 Coccidioides immitis CIMG_07019 N 0.000
CMQ_7508 Grosmannia clavigera CMQ_7508 N 0.000
Cob_07467 Colletotrichum orbiculare Cob_07467 N 0.000
COCC4DRAFT_55380 Bipolaris maydis COCC4DRAFT_55380 N 0.000
COCCADRAFT_99015 Bipolaris zeicola COCCADRAFT_99015 N 0.000
COCMIDRAFT_99482 Bipolaris oryzae COCMIDRAFT_99482 N 0.000
COCSADRAFT_211993 Bipolaris sorokiniana COCSADRAFT_211993 N 0.000
COCVIDRAFT_21525 Bipolaris victoriae COCVIDRAFT_21525 N 0.000
CPC735_033770 Coccidioides posadasii CPC735_033770 N 0.000
CSUB01_03139 Colletotrichum sublineola CSUB01_03139 N 0.000
CTHT_0031020 Chaetomium thermophilum CTHT_0031020 N 0.000
DOTSEDRAFT_68895 Dothistroma septosporum DOTSEDRAFT_68895 N 0.000
DRE_00267 Drechslerella stenobrocha DRE_00267 N 0.000
EPUS_04103 Endocarpon pusillum EPUS_04103 N 0.000
estExt_fgenesh1_pg.C_30093 Cryphonectria parasitica estExt_fgenesh1_pg.C_30093 N 0.000
estExt_Genewise1.C_sca_1_chr1_3_00545 Nectria haematococca estExt_Genewise1.C_sca_1_chr1_3_00545 N 0.000
EURHEDRAFT_517376 Aspergillus ruber EURHEDRAFT_517376 N 0.000
F503_05666 Ophiostoma piceae uamh F503_05666 N 0.000
FFUJ_01094 Fusarium fujikuroi FFUJ_01094 N 0.000
fgenesh1_pg.00009_#_431 Aspergillus carbonarius fgenesh1_pg.00009_#_431 N 0.000
FGRRES_00573 Fusarium graminearum FGRRES_00573 N 0.000
FOXG_00478 Fusarium oxysporum FOXG_00478 N 0.000
FPSE_03136 Fusarium pseudograminearum FPSE_03136 N 0.000
FVEG_01035 Fusarium verticillioides FVEG_01035 N 0.000
G647_06072 Cladophialophora carrionii G647_06072 N 0.000
GGTG_05712 Gaeumannomyces graminis GGTG_05712 N 0.000
GLRG_11035 Colletotrichum graminicola GLRG_11035 N 0.000
GMDG_00382 Pseudogymnoascus destructans GMDG_00382 N 0.000
GSTUM_00002175001 Tuber melanosporum GSTUM_00002175001 N 0.000
H072_10341 Dactylellina haptotyla H072_10341 N 0.000
H101_01266 Trichophyton interdigitale H101_01266 N 0.000
H102_00886 Trichophyton rubrum H102_00886 N 0.000
H105_00892 Trichophyton soudanense H105_00892 N 0.000
HCBG_03684 Histoplasma capsulatum HCBG_03684 N 0.000
HMPREF1120_04204 Exophiala dermatitidis HMPREF1120_04204 N 0.000
LEMA_P037490.1 Leptosphaeria maculans LEMA_P037490.1 N 0.000
M437DRAFT_75276 Aureobasidium melanogenum M437DRAFT_75276 N 0.000
M438DRAFT_372082 Aureobasidium pullulans M438DRAFT_372082 N 0.000
MAJ_00706 Metarhizium majus MAJ_00706 N 0.000
MANI_001316 Metarhizium anisopliae MANI_001316 N 0.000
MAPG_04436 Magnaporthe poae MAPG_04436 N 0.000
MBM_09638 Marssonina brunnea MBM_09638 N 0.000
MBR_03401 Metarhizium brunneum MBR_03401 N 0.000
MCYG_01483 Microsporum canis MCYG_01483 N 0.000
MCYG_01483 Arthroderma otae MCYG_01483 N 0.000
MGG_10529 Magnaporthe oryzae MGG_10529 N 0.000
MGYG_04587 Microsporum gypseum MGYG_04587 N 0.000
MPH_06015 Macrophomina phaseolina MPH_06015 N 0.000
MYCTH_2299531 Myceliophthora thermophila MYCTH_2299531 N 0.000
NechaG57399 Fusarium solani NechaG57399 N 0.000
OIDMADRAFT_53432 Oidiodendron maius OIDMADRAFT_53432 N 0.000
PAAG_08662 Paracoccidioides sp lutzii PAAG_08662 N 0.000
PABG_03829 Paracoccidioides brasiliensis PABG_03829 N 0.000
Pc22g04580 Penicillium chrysogenum Pc22g04580 N 0.000
PCH_Pc22g04580 Penicillium rubens PCH_Pc22g04580 N 0.000
PFICI_01055 Pestalotiopsis fici PFICI_01055 N 0.000
PTRG_03145 Pyrenophora triticirepentis PTRG_03145 N 0.000
PTT_13566 Pyrenophora teres PTT_13566 N 0.000
PV05_08216 Exophiala xenobiotica PV05_08216 N 0.000
PV06_01931 Exophiala oligosperma PV06_01931 N 0.000
PV07_03010 Cladophialophora immunda PV07_03010 N 0.000
PV08_02666 Exophiala spinifera PV08_02666 N 0.000
PV09_06681 Verruconis gallopava PV09_06681 N 0.000
PV10_08266 Exophiala mesophila PV10_08266 N 0.000
PV11_07147 Exophiala sideris PV11_07147 N 0.000
PVAR5_4302 Byssochlamys spectabilis PVAR5_4302 N 0.000
S40288_03918 Stachybotrys chartarum S40288_03918 N 0.000
SAPIO_CDS0868 Scedosporium apiospermum SAPIO_CDS0868 N 0.000
SBOR_7395 Sclerotinia borealis SBOR_7395 N 0.000
SEPMUDRAFT_58051 Sphaerulina musiva SEPMUDRAFT_58051 N 0.000
SETTUDRAFT_162963 Setosphaeria turcica SETTUDRAFT_162963 N 0.000
SPBR_02323 Sporothrix brasiliensis SPBR_02323 N 0.000
TEQG_07593 Trichophyton equinum TEQG_07593 N 0.000
TESG_07181 Trichophyton tonsurans TESG_07181 N 0.000
TRIATDRAFT_46834 Trichoderma atroviride TRIATDRAFT_46834 N 0.000
TRIREDRAFT_73559 Trichoderma reesei TRIREDRAFT_73559 N 0.000
TRIVIDRAFT_230020 Trichoderma virens TRIVIDRAFT_230020 N 0.000
TRV_02593 Trichophyton verrucosum TRV_02593 N 0.000
U727_0043414001 Penicillium solitum U727_0043414001 N 0.000
UCRNP2_5033 Neofusicoccum parvum UCRNP2_5033 N 0.000
UREG_05846 Uncinocarpus reesii UREG_05846 N 0.000
VDAG_03481 Verticillium dahliae VDAG_03481 N 0.000
VDBG_06331 Verticillium albo atrum VDBG_06331 N 0.000
VDBG_06331 Verticillium alfalfae VDBG_06331 N 0.000
VHEMI06242 Torrubiella hemipterigena VHEMI06242 N 0.000
X797_003964 Metarhizium robertsii X797_003964 N 0.000
Z517_05635 Fonsecaea pedrosoi Z517_05635 N 0.000
Z519_08017 Cladophialophora bantiana Z519_08017 N 0.000