LCUP011663 (Lucilia cuprina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LCUP011663 T259225_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.931 0.931
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.931 0.931
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.897 0.897
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.897 0.897
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.897 0.897
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.897 0.897
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.897 0.897
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.897 0.897
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.897 0.897
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.897 0.897
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.897 0.897
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.897 0.897
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.897 0.897
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.897 0.897
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.897 0.897
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.897 0.897
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.897 0.897
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.897 0.897
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.897 0.897
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.897 0.897
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.897 0.897
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.897 0.897
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.897 0.897
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.897 0.897
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.897 0.897
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.862 0.862
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.759 0.759
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.759 0.759
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.759 0.759
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.759 0.759
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.759 0.759
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP011663-PA MADS box 1 29

Links

Other MADS box family TFs
Other Lucilia cuprina TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
11010_YIL036W Saccharomyces mikatae 11010_YIL036W I
11119_YIL036W Saccharomyces paradoxus 11119_YIL036W I
11457_YIL036W Saccharomyces bayanus 11457_YIL036W I
6047_YER045C Saccharomyces mikatae 6047_YER045C I
6202_YER045C Saccharomyces paradoxus 6202_YER045C I
6282_YER045C Saccharomyces bayanus 6282_YER045C I
AACERI_AaceriADL104W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL104W I
ACA1 Saccharomyces cerevisiae YER045C D
AGOS_ADL104W Ashbya gossypii AGOS_ADL104W I
AOL_s00054g434 Arthrobotrys oligospora AOL_s00054g434 I
CAGL0I05170g Candida glabrata CAGL0I05170g I
CST6 Saccharomyces cerevisiae YIL036W D
DRE_02298 Drechslerella stenobrocha DRE_02298 I
Ecym_4366 Eremothecium cymbalariae Ecym_4366 I
GNLVRS01_PISO0A10934g Millerozyma farinosa GNLVRS01_PISO0A10934g I
GNLVRS01_PISO0B11001g Millerozyma farinosa GNLVRS01_PISO0B11001g I
H072_3553 Dactylellina haptotyla H072_3553 I
HPODL_04325 Ogataea parapolymorpha HPODL_04325 I
JL09_g4648 Pichia kudriavzevii JL09_g4648 N
JL09_g5469 Pichia kudriavzevii JL09_g5469 N
KAFR_0A02550 Kazachstania africana KAFR_0A02550 I
KLLA0_E04269g Kluyveromyces lactis KLLA0_E04269g I
KLTH0A03586g Kluyveromyces thermotolerans KLTH0A03586g I
KLTH0A03586g Lachancea thermotolerans KLTH0A03586g I
KNAG_0H02870 Kazachstania naganishii KNAG_0H02870 I
Kpol_1063p3 Vanderwaltozyma polyspora Kpol_1063p3 N
Kpol_1070p29 Vanderwaltozyma polyspora Kpol_1070p29 I
Kwal_18103 Kluyveromyces waltii Kwal_18103 I
MPH_06322 Macrophomina phaseolina MPH_06322 I
MPH_13454 Macrophomina phaseolina MPH_13454 I
NCAS_0A13330 Naumovozyma castellii NCAS_0A13330 I
NDAI_0A02710 Naumovozyma dairenensis NDAI_0A02710 I
SAKL0F07898g Lachancea kluyveri SAKL0F07898g I
Scas_Contig704.49 Saccharomyces castellii Scas_Contig704.49 I
TBLA_0D04750 Tetrapisispora blattae TBLA_0D04750 I
TDEL_0H02360 Torulaspora delbrueckii TDEL_0H02360 I
UCRNP2_3513 Neofusicoccum parvum UCRNP2_3513 I
XP_002492343.1 Pichia pastoris XP_002492343.1 I
ZBAI_00866 Zygosaccharomyces bailii ZBAI_00866 I
ZBAI_06176 Zygosaccharomyces bailii ZBAI_06176 I
ZYRO0D16214g Zygosaccharomyces rouxii ZYRO0D16214g I