MCOS_0000609801 (Mesocestoides corti)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MCOS_0000609801 T259603_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCOS_0000609801-mRNA-1 MADS box 69 116

Links

Other MADS box family TFs
Other Mesocestoides corti TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006507 Ailuropoda melanoleuca ENSAMEG00000006507 I 0.000
ENSCSAG00000016599 Chlorocebus sabaeus ENSCSAG00000016599 I 0.000
ENSMMUP00000008515 Macaca fascicularis ENSMMUP00000008515 I 0.000
ENSMPUG00000000156 Mustela putorius furo ENSMPUG00000000156 I 0.000
ENSNLEG00000014346 Nomascus leucogenys ENSNLEG00000014346 I 0.000
ENSOARG00000019679 Ovis aries ENSOARG00000019679 I 0.000
ENSP00000354206-D1 Bos grunniens ENSP00000354206-D1 I 0.000
ENSPANG00000007539 Papio anubis ENSPANG00000007539 I 0.000
ENSSTOG00000024495 Ictidomys tridecemlineatus ENSSTOG00000024495 I 0.000
Myotis_brandtii_ZNF219_10005327 Myotis brandtii Myotis_brandtii_ZNF219_10005327 I 0.000
Zfp219 Mus musculus ENSMUSG00000049295 I 0.000
Zfp219 Rattus norvegicus ENSRNOG00000011544 I 0.000
ZNF219 Macaca mulatta ENSMMUG00000006461 I 0.000
ZNF219 Myotis lucifugus ENSMLUG00000006987 I 0.000
ZNF219 Loxodonta africana ENSLAFG00000007094 I 0.000
ZNF219 Gorilla gorilla ENSGGOG00000007177 I 0.000
ZNF219 Homo sapiens ENSG00000165804 D 0.000
ZNF219 Oryctolagus cuniculus ENSOCUG00000009922 I 0.000
ZNF219 Otolemur garnettii ENSOGAG00000027894 I 0.000
ZNF219 Ochotona princeps ENSOPRG00000004914 I 0.000
ZNF219 Felis catus ENSFCAG00000014887 I 0.000
ZNF219 Pan troglodytes ENSPTRG00000006114 I 0.000
ZNF219 Equus caballus ENSECAG00000013524 I 0.000
ZNF219 Dasypus novemcinctus ENSDNOG00000019970 I 0.000
ZNF219 Tursiops truncatus ENSTTRG00000004281 I 0.000
ZNF219 Cavia porcellus ENSCPOG00000022085 I 0.000
ZNF219 Callithrix jacchus ENSCJAG00000009382 I 0.000
ZNF219 Bos taurus ENSBTAG00000021008 I 0.000