SMRZ_0002372101 (Schistosoma margrebowiei)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SMRZ_0002372101 T259636_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MEF2A
M03340_2.00 		Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM		 SELEX
Jolma et al.(2013)
MEF2A_1 		0.714 0.714
MEF2B
M03344_2.00 		Homo sapiens
RCTAWAAATAGM
KCTATTTWTAGY		 SELEX
Jolma et al.(2013)
MEF2B_1 		0.714 0.714
MEF2D
M03343_2.00 		Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH		 SELEX
Jolma et al.(2013)
MEF2D_1 		0.714 0.714
MEF2B
M05557_2.00 		Homo sapiens
CYNDWWWHGG
CCDWWWHNRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX 		0.714 0.714
MEF2B
M05559_2.00 		Homo sapiens
CCVDWTATGGTAACA
TGTTACCATAWHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX 		0.714 0.714
MEF2D
M05555_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX 		0.714 0.714
MEF2A
M07979_2.00 		Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha 		0.714 0.714
Mef2
M08214_2.00 		Drosophila melanogaster
YTAWWWWTAR
YTAWWWWTAR		 ChIP-seq
Contrino et al.(2012)
Mf26 		0.714 0.714
MEF2A
M08212_2.00 		Homo sapiens
CTAWWWWTAG
CTAWWWWTAG		 ChIP-seq
Contrino et al.(2012)
Mv88 		0.714 0.714
MEF2A
M08213_2.00 		Homo sapiens
AAAATAGM
KCTATTTT		 ChIP-seq
Contrino et al.(2012)
Mv90 		0.714 0.714
MEF2A
M09247_2.00 		Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A 		0.714 0.714
MEF2B
M09251_2.00 		Homo sapiens
CYWAAAATAGHHHH
DDDDCTATTTTWRG		 Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A 		0.714 0.714
MEF2D
M09250_2.00 		Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG		 Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A 		0.714 0.714
Mef2a
M09255_2.00 		Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH		 Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A 		0.714 0.714
Mef2d
M09252_2.00 		Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH		 Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A 		0.714 0.714
Mef2a
M09599_2.00 		Mus musculus
CYNDAAATAG
CTATTTHNRG		 Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529 		0.714 0.714
MEF2A
M10933_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AMEF2_Q6 		0.714 0.714
MEF2A
M10934_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMEF2_Q6 		0.714 0.714
MEF2A
M10935_2.00 		Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV		 Transfac
Matys et al.(2006)
V$MEF2_01 		0.714 0.714
MEF2A
M10936_2.00 		Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV		 Transfac
Matys et al.(2006)
V$MEF2_02 		0.714 0.714
MEF2A
M10937_2.00 		Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN		 Transfac
Matys et al.(2006)
V$MEF2_03 		0.714 0.714
MEF2A
M10938_2.00 		Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN		 Transfac
Matys et al.(2006)
V$MEF2_04 		0.714 0.714
MEF2A
M10939_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_05 		0.714 0.714
MEF2A
M10940_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_Q6 		0.714 0.714
MEF2D
M10957_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2D_Q4 		0.714 0.714
MEF2A
M10941_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2_Q6_02 		0.714 0.714
MEF2A
M10942_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MMEF2_Q6 		0.714 0.714
MEF2A
M10943_2.00 		Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN		 Transfac
Matys et al.(2006)
V$RSRFC4_01 		0.714 0.714
MEF2A
M10944_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RSRFC4_Q2 		0.714 0.714
MEF2B
M05558_2.00 		Homo sapiens
CYWWWWWNGG
CCNWWWWWRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX 		0.714 0.714
MEF2B
M05560_2.00 		Homo sapiens
CCVDATATGGTAACR
YGTTACCATATHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX 		0.714 0.714
MEF2D
M05556_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0002372101-mRNA-1 MADS box 4 45

Links

Other MADS box family TFs
Other Schistosoma margrebowiei TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R013766 Calypte anna Aan_R013766 I 0.700
Afo_R010314 Aptenodytes forsteri Afo_R010314 I 0.700
A_00791 Schistosoma haematobium A_00791 I 0.952
A_02397 Schistosoma haematobium A_02397 I 0.714
BGIBMGA002590 Bombyx mori BGIBMGA002590 I 0.724
BGLB004146 Biomphalaria glabrata BGLB004146 I 0.750
BORCS8-MEF2B Tursiops truncatus ENSTTRG00000007659 I 0.744
Brh_R003791 Buceros rhinoceros Brh_R003791 I 0.700
CAOG_00636 Capsaspora owczarzaki CAOG_00636 I 0.714
CGI_10021701 Crassostrea gigas CGI_10021701 I 0.738
D915_04700 Fasciola hepatica D915_04700 I 0.738
D917_06534 Trichinella nativa D917_06534 I 0.714
D918_01170 Trichuris suis D918_01170 I 0.714
ECPE_0001501901 Echinostoma caproni ECPE_0001501901 N 0.786
ENSAMXG00000021403 Astyanax mexicanus ENSAMXG00000021403 I 0.714
ENSCSAG00000014772 Chlorocebus sabaeus ENSCSAG00000014772 I 0.700
ENSLOCG00000004811 Lepisosteus oculatus ENSLOCG00000004811 I 0.714
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.737
ENSOARG00000009422 Ovis aries ENSOARG00000009422 I 0.750
ENSP00000396219-D1 Bos grunniens ENSP00000396219-D1 I 0.700
ENSSARG00000011307 Sorex araneus ENSSARG00000011307 I 0.744
ENSTBEG00000010368 Tupaia belangeri ENSTBEG00000010368 I 0.744
e_gw.643.15.1 Branchiostoma floridae e_gw.643.15.1 I 0.700
Gfo_R008233 Geospiza fortis Gfo_R008233 I 0.700
HelroG156791 Helobdella robusta HelroG156791 I 0.714
HMEL015497 Heliconius melpomene HMEL015497 I 0.700
HpaG813528 Hyaloperonospora arabidopsidis HpaG813528 I 0.714
LCUP003038 Lucilia cuprina LCUP003038 I 0.707
LotgiG77597 Lottia gigantea LotgiG77597 I 0.714
maker-pag1_scaffold_380-snap-gene-0.10 Pythium aphanidermatum maker-pag1_scaffold_380-snap-gene-0.10 I 0.714
MEF2A Loxodonta africana ENSLAFG00000004656 I 0.714
mef2a Xenopus tropicalis XB-GENE-487394 I 0.714
MEF2A Equus caballus ENSECAG00000011593 I 0.714
MEF2A Pteropus vampyrus ENSPVAG00000014423 I 0.714
mef2a.L Xenopus laevis XB-GENE-487398 I 0.714
mef2ab Danio rerio ENSDARG00000057527 I 0.714
mef2ab Gasterosteus aculeatus ENSGACG00000014856 I 0.714
MEF2B Microcebus murinus ENSMICG00000000439 I 0.744
MEF2B Otolemur garnettii ENSOGAG00000001694 I 0.725
mef2b Tetraodon nigroviridis ENSTNIG00000013196 I 0.724
mef2b Takifugu rubripes ENSTRUG00000018156 I 0.724
MEF2C Canis familiaris ENSCAFG00000008302 I 0.700
mef2ca Tetraodon nigroviridis ENSTNIG00000013575 I 0.714
MEF2D Tursiops truncatus ENSTTRG00000001110 I 0.744
ML07781a Mnemiopsis leidyi ML07781a I 0.714
NECAME_18899 Necator americanus NECAME_18899 I 0.711
Ogr08060 Ophisaurus gracilis Ogr08060 I 0.724
Phyra79159 Phytophthora ramorum Phyra79159 I 0.714
PTRK_0001543700 Parastrongyloides trichosuri PTRK_0001543700 I 0.714
Pvit_09928 Pogona vitticeps Pvit_09928 I 0.714
RSKR_0000627500 Rhabditophanes kr3021 RSKR_0000627500 I 0.714
Sakowv30020349m.g Saccoglossus kowalevskii Sakowv30020349m.g I 0.714
SCUD_0000292101 Schistosoma curassoni SCUD_0000292101 I 0.714
SCUD_0001536701 Schistosoma curassoni SCUD_0001536701 I 0.952
Sjc_0033490 Schistosoma japonicum Sjc_0033490 I 0.714
Smp_161530 Schistosoma mansoni Smp_161530 I 0.952
SMTD_0000978401 Schistosoma mattheei SMTD_0000978401 I 0.714
SMTD_0001186401 Schistosoma mattheei SMTD_0001186401 I 0.952
SMU15001360 Schmidtea mediterranea SMU15001360 I 0.738
SMU15039993 Schmidtea mediterranea SMU15039993 I 0.738
snap_masked-pag1_scaffold_483-abinit-gene-0.32 Pythium aphanidermatum snap_masked-pag1_scaffold_483-abinit-gene-0.32 I 0.714
SPAL_0000785900 Strongyloides papillosus SPAL_0000785900 I 0.714
SSTP_0001012600 Strongyloides stercoralis SSTP_0001012600 I 0.714
SVE_1839300 Strongyloides venezuelensis SVE_1839300 I 0.714
TRE_0000025101 Trichobilharzia regenti TRE_0000025101 I 0.952
TTRE_0000156801 Trichuris trichiura TTRE_0000156801 I 0.714