SMRZ_0002507801 (Schistosoma margrebowiei)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SMRZ_0002507801 T259637_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.729 0.729
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.729 0.729
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.729 0.729
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.729 0.729
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.729 0.729
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.729 0.729
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.729 0.729
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.729 0.729
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.729 0.729
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.729 0.729
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.729 0.729
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.729 0.729
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.729 0.729
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.729 0.729
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.729 0.729
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.729 0.729
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.729 0.729
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.729 0.729
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.729 0.729
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.729 0.729
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.729 0.729
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.729 0.729
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0002507801-mRNA-1 MADS box 124 171

Links

Other MADS box family TFs
Other Schistosoma margrebowiei TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002806 Calypte anna Aan_R002806 I 0.000
Aan_R006146 Calypte anna Aan_R006146 I 0.000
Aan_R015421 Calypte anna Aan_R015421 I 0.000
Afo_R002924 Aptenodytes forsteri Afo_R002924 I 0.000
Afo_R007273 Aptenodytes forsteri Afo_R007273 I 0.000
Afo_R015511 Aptenodytes forsteri Afo_R015511 I 0.000
Alligator_sinensis_CCG019297.1 Alligator sinensis Alligator_sinensis_CCG019297.1 I 0.000
Alligator_sinensis_CCG020787.1 Alligator sinensis Alligator_sinensis_CCG020787.1 I 0.000
Brh_R001017 Buceros rhinoceros Brh_R001017 I 0.000
Brh_R006187 Buceros rhinoceros Brh_R006187 I 0.000
Brh_R013134 Buceros rhinoceros Brh_R013134 I 0.000
Cmyd_10006949 Chelonia mydas Cmyd_10006949 I 0.000
Cmyd_10012463 Chelonia mydas Cmyd_10012463 I 0.000
Cmyd_10015871 Chelonia mydas Cmyd_10015871 I 0.000
ENSAMEG00000008051 Ailuropoda melanoleuca ENSAMEG00000008051 I 0.000
ENSAMEG00000008058 Ailuropoda melanoleuca ENSAMEG00000008058 I 0.000
ENSAMEG00000009888 Ailuropoda melanoleuca ENSAMEG00000009888 I 0.000
ENSAMXG00000001814 Astyanax mexicanus ENSAMXG00000001814 I 0.000
ENSAPLG00000003006 Anas platyrhynchos ENSAPLG00000003006 I 0.000
ENSAPLG00000015016 Anas platyrhynchos ENSAPLG00000015016 I 0.000
ENSBTAP00000018632-D1 Bos grunniens ENSBTAP00000018632-D1 I 0.000
ENSCPOG00000005792 Cavia porcellus ENSCPOG00000005792 I 0.000
ENSCPOG00000007605 Cavia porcellus ENSCPOG00000007605 I 0.000
ENSCSAG00000002731 Chlorocebus sabaeus ENSCSAG00000002731 I 0.000
ENSCSAG00000016006 Chlorocebus sabaeus ENSCSAG00000016006 I 0.000
ENSFALG00000000489 Ficedula albicollis ENSFALG00000000489 I 0.000
ENSFALG00000007512 Ficedula albicollis ENSFALG00000007512 I 0.000
ENSFALG00000012948 Ficedula albicollis ENSFALG00000012948 I 0.000
ENSGMOG00000005918 Gadus morhua ENSGMOG00000005918 I 0.000
ENSGMOG00000012959 Gadus morhua ENSGMOG00000012959 I 0.000
ENSLACG00000011419 Latimeria chalumnae ENSLACG00000011419 I 0.000
ENSLACG00000011807 Latimeria chalumnae ENSLACG00000011807 I 0.000
ENSLOCG00000004967 Lepisosteus oculatus ENSLOCG00000004967 I 0.000
ENSLOCG00000013557 Lepisosteus oculatus ENSLOCG00000013557 I 0.000
ENSMEUG00000000683 Macropus eugenii ENSMEUG00000000683 I 0.000
ENSMGAG00000003697 Meleagris gallopavo ENSMGAG00000003697 I 0.000
ENSMPUG00000014968 Mustela putorius furo ENSMPUG00000014968 I 0.000
ENSMPUG00000018161 Mustela putorius furo ENSMPUG00000018161 I 0.000
ENSNLEG00000001118 Nomascus leucogenys ENSNLEG00000001118 I 0.000
ENSNLEG00000007199 Nomascus leucogenys ENSNLEG00000007199 I 0.000
ENSOARG00000012131 Ovis aries ENSOARG00000012131 I 0.000
ENSOARG00000014822 Ovis aries ENSOARG00000014822 I 0.000
ENSOARG00000019252 Ovis aries ENSOARG00000019252 I 0.000
ENSONIG00000009010 Oreochromis niloticus ENSONIG00000009010 I 0.000
ENSONIG00000010379 Oreochromis niloticus ENSONIG00000010379 I 0.000
ENSOPRG00000009026 Ochotona princeps ENSOPRG00000009026 I 0.000
ENSP00000331614 Macaca fascicularis ENSP00000331614 I 0.000
ENSP00000342876 Macaca fascicularis ENSP00000342876 I 0.000
ENSP00000342876-D1 Bos grunniens ENSP00000342876-D1 I 0.000
ENSP00000418684 Macaca fascicularis ENSP00000418684 I 0.000
ENSP00000418684-D1 Bos grunniens ENSP00000418684-D1 I 0.000
ENSPANG00000005244 Papio anubis ENSPANG00000005244 I 0.000
ENSPANG00000016694 Papio anubis ENSPANG00000016694 I 0.000
ENSPANG00000021743 Papio anubis ENSPANG00000021743 I 0.000
ENSPFOG00000002235 Poecilia formosa ENSPFOG00000002235 I 0.000
ENSPFOG00000013073 Poecilia formosa ENSPFOG00000013073 I 0.000
ENSPMAG00000001307 Petromyzon marinus ENSPMAG00000001307 I 0.000
ENSPPYG00000008476 Pongo abelii ENSPPYG00000008476 I 0.000
ENSPPYG00000013139 Pongo abelii ENSPPYG00000013139 I 0.000
ENSPPYG00000017561 Pongo abelii ENSPPYG00000017561 I 0.000
ENSPSIG00000009682 Pelodiscus sinensis ENSPSIG00000009682 I 0.000
ENSPSIG00000014940 Pelodiscus sinensis ENSPSIG00000014940 I 0.000
ENSPSIG00000016492 Pelodiscus sinensis ENSPSIG00000016492 I 0.000
ENSSHAG00000014629 Sarcophilus harrisii ENSSHAG00000014629 I 0.000
ENSSHAG00000016773 Sarcophilus harrisii ENSSHAG00000016773 I 0.000
ENSSSCG00000029806 Sus scrofa ENSSSCG00000029806 I 0.000
ENSSTOG00000003579 Ictidomys tridecemlineatus ENSSTOG00000003579 I 0.000
ENSSTOG00000003804 Ictidomys tridecemlineatus ENSSTOG00000003804 I 0.000
ENSSTOG00000011683 Ictidomys tridecemlineatus ENSSTOG00000011683 I 0.000
ENSTNIG00000014148 Tetraodon nigroviridis ENSTNIG00000014148 I 0.000
ENSTSYG00000006472 Tarsius syrichta ENSTSYG00000006472 I 0.000
ENSXMAG00000008077 Xiphophorus maculatus ENSXMAG00000008077 I 0.000
Gfo_R009614 Geospiza fortis Gfo_R009614 I 0.000
Gfo_R012078 Geospiza fortis Gfo_R012078 I 0.000
Gfo_R016268 Geospiza fortis Gfo_R016268 I 0.000
IKZF1 Anolis carolinensis ENSACAG00000008236 I 0.000
IKZF1 Bos taurus ENSBTAG00000014016 I 0.000
IKZF1 Canis familiaris ENSCAFG00000003374 I 0.000
IKZF1 Callithrix jacchus ENSCJAG00000010988 I 0.000
ikzf1 Danio rerio ENSDARG00000013539 I 0.000
IKZF1 Dasypus novemcinctus ENSDNOG00000000179 I 0.000
IKZF1 Equus caballus ENSECAG00000018339 I 0.000
IKZF1 Felis catus ENSFCAG00000018516 I 0.000
IKZF1 Homo sapiens ENSG00000185811 D 0.000
ikzf1 Gasterosteus aculeatus ENSGACG00000003033 I 0.000
IKZF1 Gallus gallus ENSGALG00000013086 I 0.000
IKZF1 Gorilla gorilla ENSGGOG00000004969 I 0.000
IKZF1 Meleagris gallopavo ENSMGAG00000006477 I 0.000
IKZF1 Myotis lucifugus ENSMLUG00000003135 I 0.000
IKZF1 Macaca mulatta ENSMMUG00000000504 I 0.000
IKZF1 Monodelphis domestica ENSMODG00000009274 I 0.000
Ikzf1 Mus musculus ENSMUSG00000018654 D 0.000
IKZF1 Ornithorhynchus anatinus ENSOANG00000000286 I 0.000
IKZF1 Oryctolagus cuniculus ENSOCUG00000014423 I 0.000
IKZF1 Otolemur garnettii ENSOGAG00000005868 I 0.000
IKZF1 Ochotona princeps ENSOPRG00000010757 I 0.000
IKZF1 Procavia capensis ENSPCAG00000008500 I 0.000
IKZF1 Pan troglodytes ENSPTRG00000019187 I 0.000
IKZF1 Pteropus vampyrus ENSPVAG00000010570 I 0.000
Ikzf1 Rattus norvegicus ENSRNOG00000004444 I 0.000
IKZF1 Tupaia belangeri ENSTBEG00000004896 I 0.000
IKZF1 Taeniopygia guttata ENSTGUG00000007910 I 0.000
ikzf1 Tetraodon nigroviridis ENSTNIG00000004159 I 0.000
ikzf1 Takifugu rubripes ENSTRUG00000017779 I 0.000
IKZF1 Tursiops truncatus ENSTTRG00000007440 I 0.000
IKZF2 Anolis carolinensis ENSACAG00000025864 I 0.000
IKZF2 Canis familiaris ENSCAFG00000014224 I 0.000
IKZF2 Callithrix jacchus ENSCJAG00000011409 I 0.000
IKZF2 Cavia porcellus ENSCPOG00000013506 I 0.000
Ikzf2 Dipodomys ordii ENSDORG00000007539 I 0.000
IKZF2 Erinaceus europaeus ENSEEUG00000001089 I 0.000
IKZF2 Echinops telfairi ENSETEG00000019814 I 0.000
IKZF2 Felis catus ENSFCAG00000009654 I 0.000
IKZF2 Homo sapiens ENSG00000030419 D 0.000
IKZF2 Gallus gallus ENSGALG00000003136 I 0.000
IKZF2 Gorilla gorilla ENSGGOG00000011301 I 0.000
IKZF2 Loxodonta africana ENSLAFG00000008236 I 0.000
IKZF2 Microcebus murinus ENSMICG00000013862 I 0.000
IKZF2 Myotis lucifugus ENSMLUG00000012494 I 0.000
IKZF2 Macaca mulatta ENSMMUG00000000381 I 0.000
Ikzf2 Mus musculus ENSMUSG00000025997 I 0.000
IKZF2 Oryctolagus cuniculus ENSOCUG00000007309 I 0.000
IKZF2 Otolemur garnettii ENSOGAG00000016680 I 0.000
IKZF2 Pan troglodytes ENSPTRG00000012884 I 0.000
IKZF2 Pteropus vampyrus ENSPVAG00000014197 I 0.000
Ikzf2 Rattus norvegicus ENSRNOG00000027430 I 0.000
IKZF2 Sus scrofa ENSSSCG00000016164 I 0.000
IKZF2 Tupaia belangeri ENSTBEG00000010122 I 0.000
IKZF2 Taeniopygia guttata ENSTGUG00000002874 I 0.000
IKZF2 Vicugna pacos ENSVPAG00000004262 I 0.000
ikzf2 Xenopus tropicalis XB-GENE-1013632 I 0.000
ikzf2.S Xenopus laevis XB-GENE-17346220 I 0.000
IKZF3 Anolis carolinensis ENSACAG00000003308 I 0.000
IKZF3 Bos taurus ENSBTAG00000011003 I 0.000
IKZF3 Canis familiaris ENSCAFG00000016310 I 0.000
IKZF3 Callithrix jacchus ENSCJAG00000008957 I 0.000
IKZF3 Dasypus novemcinctus ENSDNOG00000015682 I 0.000
IKZF3 Equus caballus ENSECAG00000007441 I 0.000
IKZF3 Echinops telfairi ENSETEG00000005889 I 0.000
IKZF3 Felis catus ENSFCAG00000030732 I 0.000
IKZF3 Homo sapiens ENSG00000161405 D 0.000
IKZF3 Gasterosteus aculeatus ENSGACG00000018123 I 0.000
IKZF3 Gallus gallus ENSGALG00000013481 I 0.000
IKZF3 Gorilla gorilla ENSGGOG00000009814 I 0.000
IKZF3 Loxodonta africana ENSLAFG00000000289 I 0.000
IKZF3 Meleagris gallopavo ENSMGAG00000002822 I 0.000
IKZF3 Microcebus murinus ENSMICG00000010571 I 0.000
IKZF3 Myotis lucifugus ENSMLUG00000003323 I 0.000
IKZF3 Macaca mulatta ENSMMUG00000017337 I 0.000
IKZF3 Monodelphis domestica ENSMODG00000012901 I 0.000
Ikzf3 Mus musculus ENSMUSG00000018168 I 0.000
IKZF3 Ornithorhynchus anatinus ENSOANG00000003623 I 0.000
IKZF3 Oryctolagus cuniculus ENSOCUG00000001355 I 0.000
IKZF3 Otolemur garnettii ENSOGAG00000007067 I 0.000
IKZF3 Oryzias latipes ENSORLG00000002674 I 0.000
IKZF3 Pan troglodytes ENSPTRG00000009103 I 0.000
IKZF3 Pteropus vampyrus ENSPVAG00000008536 I 0.000
Ikzf3 Rattus norvegicus ENSRNOG00000007200 I 0.000
IKZF3 Sus scrofa ENSSSCG00000017494 I 0.000
IKZF3 Tupaia belangeri ENSTBEG00000012590 I 0.000
IKZF3 Taeniopygia guttata ENSTGUG00000002245 I 0.000
IKZF3 Takifugu rubripes ENSTRUG00000005964 I 0.000
IKZF3 Tursiops truncatus ENSTTRG00000008224 I 0.000
IKZF3 Vicugna pacos ENSVPAG00000001706 I 0.000
ikzf3.L Xenopus laevis XB-GENE-994463 I 0.000
Ogr12798 Ophisaurus gracilis Ogr12798 I 0.000
Pvit_13083 Pogona vitticeps Pvit_13083 I 0.000
Pvit_18490 Pogona vitticeps Pvit_18490 I 0.000
Tal_R002368 Tyto alba Tal_R002368 I 0.000
Tal_R003737 Tyto alba Tal_R003737 I 0.000
XP_002940416 Xenopus tropicalis XP_002940416 I 0.000