SROB_0002013401 (Schistosoma rodhaini)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SROB_0002013401 T259649_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0002013401-mRNA-1 MADS box 121 168

Links

Other MADS box family TFs
Other Schistosoma rodhaini TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10007085 Chelonia mydas Cmyd_10007085 I
ENSAMEG00000006549 Ailuropoda melanoleuca ENSAMEG00000006549 I
ENSAPLG00000003549 Anas platyrhynchos ENSAPLG00000003549 I
ENSCHOG00000003363 Choloepus hoffmanni ENSCHOG00000003363 I
ENSCSAG00000003241 Chlorocebus sabaeus ENSCSAG00000003241 I
ENSEEUG00000003268 Erinaceus europaeus ENSEEUG00000003268 I
ENSMEUG00000000185 Macropus eugenii ENSMEUG00000000185 I
ENSMPUG00000010285 Mustela putorius furo ENSMPUG00000010285 I
ENSOARG00000002343 Ovis aries ENSOARG00000002343 I
ENSP00000246912 Macaca fascicularis ENSP00000246912 I
ENSPANG00000021416 Papio anubis ENSPANG00000021416 I
ENSPPYG00000008387 Pongo abelii ENSPPYG00000008387 I
ENSPSIG00000015412 Pelodiscus sinensis ENSPSIG00000015412 I
ENSSHAG00000014167 Sarcophilus harrisii ENSSHAG00000014167 I
ENSSTOG00000003660 Ictidomys tridecemlineatus ENSSTOG00000003660 I
ENSTSYG00000007534 Tarsius syrichta ENSTSYG00000007534 I
MLX Sus scrofa ENSSSCG00000017397 I
MLX Sorex araneus ENSSARG00000014166 I
Mlx Rattus norvegicus ENSRNOG00000019983 I
MLX Pteropus vampyrus ENSPVAG00000016556 I
MLX Pan troglodytes ENSPTRG00000009208 I
MLX Tupaia belangeri ENSTBEG00000002111 I
MLX Tursiops truncatus ENSTTRG00000016407 I
MLX Procavia capensis ENSPCAG00000014225 I
MLX Oryctolagus cuniculus ENSOCUG00000015210 I
MLX Otolemur garnettii ENSOGAG00000009867 I
MLX Canis familiaris ENSCAFG00000029102 I
MLX Callithrix jacchus ENSCJAG00000005011 I
MLX Dasypus novemcinctus ENSDNOG00000045315 I
MLX Equus caballus ENSECAG00000023980 I
MLX Echinops telfairi ENSETEG00000017247 I
MLX Felis catus ENSFCAG00000011667 I
MLX Homo sapiens ENSG00000108788 D
MLX Gorilla gorilla ENSGGOG00000010869 I
MLX Loxodonta africana ENSLAFG00000000328 I
MLX Microcebus murinus ENSMICG00000010258 I
MLX Myotis lucifugus ENSMLUG00000016670 I
MLX Macaca mulatta ENSMMUG00000009887 I
MLX Monodelphis domestica ENSMODG00000014918 D
Mlx Mus musculus ENSMUSG00000017801 D
MLX Ochotona princeps ENSOPRG00000012322 I
Myotis_brandtii_MLX_10015321 Myotis brandtii Myotis_brandtii_MLX_10015321 I
Ogr17012 Ophisaurus gracilis Ogr17012 I
Pvit_17633 Pogona vitticeps Pvit_17633 I