TASK_0000457101 (Taenia asiatica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 TASK_0000457101 T259660_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TASK_0000457101-mRNA-1 MADS box 61 108

Links

Other MADS box family TFs
Other Taenia asiatica TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001283001 Angiostrongylus cantonensis ACAC_0001283001 N
ACAC_0001410501 Angiostrongylus cantonensis ACAC_0001410501 N
ACOC_0000469401 Angiostrongylus costaricensis ACOC_0000469401 N
ACOC_0000510301 Angiostrongylus costaricensis ACOC_0000510301 N
ANCCAN_02247 Ancylostoma caninum ANCCAN_02247 N
ANCCAN_23216 Ancylostoma caninum ANCCAN_23216 N
ANCCAN_24109 Ancylostoma caninum ANCCAN_24109 N
ANCCEY_03736 Ancylostoma ceylanicum ANCCEY_03736 N
ANCDUO_15875 Ancylostoma duodenale ANCDUO_15875 N
ANCDUO_17699 Ancylostoma duodenale ANCDUO_17699 N
ASIM_0001057401 Anisakis simplex ASIM_0001057401 N
ASU_11875 Ascaris suum ASU_11875 N
Bm11274 Brugia malayi Bm11274 N
Bm2582 Brugia malayi Bm2582 N
BTMF_0001630801 Brugia timori BTMF_0001630801 N
CBG21175 Caenorhabditis briggsae CBG21175 N
CBN05278 Caenorhabditis brenneri CBN05278 N
CGOC_0001421301 Cylicostephanus goldi CGOC_0001421301 N
CJA09215 Caenorhabditis japonica CJA09215 N
cnd-1 Caenorhabditis elegans WBGene00000561 N
CRE29369 Caenorhabditis remanei CRE29369 N
DICVIV_00659 Dictyocaulus viviparus DICVIV_00659 N
DICVIV_09133 Dictyocaulus viviparus DICVIV_09133 N
DME_0000059301 Dracunculus medinensis DME_0000059301 N
EEL_0000830101 Elaeophora elaphi EEL_0000830101 N
EVEC_0000194801 Enterobius vermicularis EVEC_0000194801 N
HCOI00330900 Haemonchus contortus HCOI00330900 N
HCOI01806100 Haemonchus contortus HCOI01806100 N
HPBE_0000440101 Heligmosomoides bakeri HPBE_0000440101 N
HPBE_0001513201 Heligmosomoides bakeri HPBE_0001513201 N
HPLM_0002087001 Haemonchus placei HPLM_0002087001 N
L596_g11850 Steinernema carpocapsae L596_g11850 N
L889_g22661 Steinernema feltiae L889_g22661 N
L892_g11119 Steinernema scapterisci L892_g11119 N
L898_g21717 Steinernema monticolum L898_g21717 N
NBR_0000040001 Nippostrongylus brasiliensis NBR_0000040001 N
NBR_0000629001 Nippostrongylus brasiliensis NBR_0000629001 N
NECAME_08826 Necator americanus NECAME_08826 N
NECAME_13951 Necator americanus NECAME_13951 N
nLs.2.1.2.g07235 Litomosoides sigmodontis nLs.2.1.2.g07235 N
OESDEN_11949 Oesophagostomum dentatum OESDEN_11949 N
OESDEN_12713 Oesophagostomum dentatum OESDEN_12713 N
SMUV_0000052701 Syphacia muris SMUV_0000052701 N
TCLT_0000096701 Thelazia callipaeda TCLT_0000096701 N
TCNE_0000182901 Toxocara canis TCNE_0000182901 N
TELCIR_06949 Teladorsagia circumcincta TELCIR_06949 N
TELCIR_17174 Teladorsagia circumcincta TELCIR_17174 N
TELCIR_18013 Teladorsagia circumcincta TELCIR_18013 N
WBGene00244893 Onchocerca volvulus WBGene00244893 N
WUBG_13863 Wuchereria bancrofti WUBG_13863 N