RVE5 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G01280 T266481_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE5
M01079_2.00		 Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138		 (Direct) (Direct)
RVE5
M07100_2.00		 Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a		 (Direct) (Direct)
RVE5
M07101_2.00		 Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.842 0.891
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.803 0.891
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.795 0.870
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.795 0.870
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.795 0.870
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.795 0.870
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.795 0.870
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.793 0.870
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.793 0.870
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.793 0.870
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.745 0.696
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.745 0.696
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.745 0.696
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.713 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01079_2.00 Myb 51 96

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G01280.1 Myb 59 104
AT4G01280.2 Myb 59 104

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009576 Ailuropoda melanoleuca ENSAMEG00000009576 I
ENSCPOG00000011396 Cavia porcellus ENSCPOG00000011396 I
ENSCSAG00000000923 Chlorocebus sabaeus ENSCSAG00000000923 I
ENSMPUG00000015896 Mustela putorius furo ENSMPUG00000015896 I
ENSNLEG00000008477 Nomascus leucogenys ENSNLEG00000008477 I
ENSOARG00000007586 Ovis aries ENSOARG00000007586 I
ENSP00000324064-D75 Bos grunniens ENSP00000324064-D75 I
ENSPANG00000018160 Papio anubis ENSPANG00000018160 I
ENSPPYG00000001743 Pongo abelii ENSPPYG00000001743 I
ENSSSCG00000023614 Sus scrofa ENSSSCG00000023614 I
ENSSTOG00000001212 Ictidomys tridecemlineatus ENSSTOG00000001212 I
Myotis_brandtii_ZNF436_10029737 Myotis brandtii Myotis_brandtii_ZNF436_10029737 I
Zfp46 Mus musculus ENSMUSG00000051351 I
Zfp46 Rattus norvegicus ENSRNOG00000049975 I
Zfp46 Dipodomys ordii ENSDORG00000007438 I
ZNF436 Procavia capensis ENSPCAG00000010535 I
ZNF436 Bos taurus ENSBTAG00000002594 I
ZNF436 Canis familiaris ENSCAFG00000031798 I
ZNF436 Vicugna pacos ENSVPAG00000006412 I
ZNF436 Tursiops truncatus ENSTTRG00000007756 I
ZNF436 Tupaia belangeri ENSTBEG00000002827 I
ZNF436 Choloepus hoffmanni ENSCHOG00000005098 I
ZNF436 Callithrix jacchus ENSCJAG00000005489 I
ZNF436 Sorex araneus ENSSARG00000012155 I
ZNF436 Dasypus novemcinctus ENSDNOG00000015883 I
ZNF436 Pteropus vampyrus ENSPVAG00000014803 I
ZNF436 Pan troglodytes ENSPTRG00000000325 I
ZNF436 Loxodonta africana ENSLAFG00000012795 I
ZNF436 Equus caballus ENSECAG00000011988 I
ZNF436 Ochotona princeps ENSOPRG00000012417 I
ZNF436 Otolemur garnettii ENSOGAG00000009181 I
ZNF436 Oryctolagus cuniculus ENSOCUG00000010670 I
ZNF436 Erinaceus europaeus ENSEEUG00000005276 I
ZNF436 Felis catus ENSFCAG00000030008 I
ZNF436 Homo sapiens ENSG00000125945 D
ZNF436 Gorilla gorilla ENSGGOG00000011273 I
ZNF436 Monodelphis domestica ENSMODG00000016145 I
ZNF436 Macaca mulatta ENSMMUG00000010973 I
ZNF436 Myotis lucifugus ENSMLUG00000007596 I
ZNF436 Microcebus murinus ENSMICG00000005876 I