Bo1g101090 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g101090 T267091_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.875 0.979
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.875 0.979
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.875 0.979
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.875 0.979
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.797 0.936
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.797 0.936
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.797 0.936
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.795 0.809
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.789 0.787
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.789 0.787
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.789 0.787
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.772 0.766
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.772 0.766
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.772 0.809
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.772 0.809
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.772 0.809
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.772 0.809
Q5IWM2_WHEAT
M11059_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB80_01 		0.700 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g101090.1 Myb 39 90

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

791 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_224213 Agaricus bisporus AGABI2DRAFT_224213 N
BOTBODRAFT_50846 Botryobasidium botryosum BOTBODRAFT_50846 N
CERSUDRAFT_89102 Ceriporiopsis subvermispora CERSUDRAFT_89102 N
CY34DRAFT_21340 Suillus luteus CY34DRAFT_21340 N
DICSQDRAFT_163586 Dichomitus squalens DICSQDRAFT_163586 N
estExt_Genewise1.C_70735 Heterobasidion annosum estExt_Genewise1.C_70735 N
FIBRA_04563 Fibroporia radiculosa FIBRA_04563 N
FOMPIDRAFT_1031471 Fomitopsis pinicola FOMPIDRAFT_1031471 N
GALMADRAFT_238181 Galerina marginata GALMADRAFT_238181 N
GLOTRDRAFT_66280 Gloeophyllum trabeum GLOTRDRAFT_66280 N
HYDPIDRAFT_182671 Hydnomerulius pinastri HYDPIDRAFT_182671 N
JAAARDRAFT_30454 Jaapia argillacea JAAARDRAFT_30454 N
K443DRAFT_672892 Laccaria amethystina K443DRAFT_672892 N
M404DRAFT_248099 Pisolithus tinctorius M404DRAFT_248099 N
M407DRAFT_30153 Tulasnella calospora M407DRAFT_30153 N
M408DRAFT_198102 Serendipita vermifera M408DRAFT_198102 N
M413DRAFT_444187 Hebeloma cylindrosporum M413DRAFT_444187 N
M422DRAFT_55406 Sphaerobolus stellatus M422DRAFT_55406 N
Moror_12409 Moniliophthora roreri Moror_12409 N
PAXRUDRAFT_143066 Paxillus rubicundulus PAXRUDRAFT_143066 N
PHACADRAFT_262394 Phanerochaete carnosa PHACADRAFT_262394 N
PHLGIDRAFT_126149 Phlebiopsis gigantea PHLGIDRAFT_126149 N
PIIN_00682 Piriformospora indica PIIN_00682 N
PILCRDRAFT_812975 Piloderma croceum PILCRDRAFT_812975 N
PISMIDRAFT_684265 Pisolithus microcarpus PISMIDRAFT_684265 N
SCHCODRAFT_81726 Schizophyllum commune SCHCODRAFT_81726 N
SERLA73DRAFT_55337 Serpula lacrymans SERLA73DRAFT_55337 N