Bo5g002760 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g002760 T267349_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.891 0.978
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.891 0.978
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.881 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.836 0.870
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.818 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.818 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.818 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.818 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.818 0.804
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.767 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.767 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.767 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.668 0.674
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.668 0.674
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.668 0.674
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.665 0.652
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.665 0.652
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.665 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g002760.1 Myb 24 69

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

326 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009789 Calypte anna Aan_R009789 I 0.000
Afo_R014889 Aptenodytes forsteri Afo_R014889 I 0.000
Alligator_sinensis_CCG012594.1 Alligator sinensis Alligator_sinensis_CCG012594.1 I 0.000
BGLB010755 Biomphalaria glabrata BGLB010755 I 0.000
Brh_R007937 Buceros rhinoceros Brh_R007937 I 0.000
CapteG41307 Capitella teleta CapteG41307 I 0.000
CapteG65387 Capitella teleta CapteG65387 I 0.000
CGI_10019998 Crassostrea gigas CGI_10019998 I 0.000
CGI_10023146 Crassostrea gigas CGI_10023146 I 0.000
Cmyd_10005462 Chelonia mydas Cmyd_10005462 I 0.000
Cmyd_10011949 Chelonia mydas Cmyd_10011949 I 0.000
D915_09810 Fasciola hepatica D915_09810 I 0.000
ECPE_0001595001 Echinostoma caproni ECPE_0001595001 I 0.000
ENSAMEG00000015013 Ailuropoda melanoleuca ENSAMEG00000015013 I 0.000
ENSAMEG00000019633 Ailuropoda melanoleuca ENSAMEG00000019633 I 0.000
ENSAMXG00000026066 Astyanax mexicanus ENSAMXG00000026066 I 0.000
ENSAMXG00000026284 Astyanax mexicanus ENSAMXG00000026284 I 0.000
ENSAPLG00000002295 Anas platyrhynchos ENSAPLG00000002295 I 0.000
ENSBTAP00000021340-D1 Bos grunniens ENSBTAP00000021340-D1 I 0.000
ENSCSAG00000000185 Chlorocebus sabaeus ENSCSAG00000000185 I 0.000
ENSCSAG00000018687 Chlorocebus sabaeus ENSCSAG00000018687 I 0.000
ENSDORG00000006743 Dipodomys ordii ENSDORG00000006743 I 0.000
ENSFALG00000012862 Ficedula albicollis ENSFALG00000012862 I 0.000
ENSGALG00000027381 Gallus gallus ENSGALG00000027381 I 0.000
ENSGMOG00000018006 Gadus morhua ENSGMOG00000018006 I 0.000
ENSGMOG00000018584 Gadus morhua ENSGMOG00000018584 I 0.000
ENSLACG00000005047 Latimeria chalumnae ENSLACG00000005047 I 0.000
ENSLACG00000005481 Latimeria chalumnae ENSLACG00000005481 I 0.000
ENSLOCG00000017350 Lepisosteus oculatus ENSLOCG00000017350 I 0.000
ENSLOCG00000017506 Lepisosteus oculatus ENSLOCG00000017506 I 0.000
ENSMEUG00000002914 Macropus eugenii ENSMEUG00000002914 I 0.000
ENSMICG00000004313 Microcebus murinus ENSMICG00000004313 I 0.000
ENSMMUG00000029441 Macaca mulatta ENSMMUG00000029441 I 0.000
ENSMPUG00000001227 Mustela putorius furo ENSMPUG00000001227 I 0.000
ENSMPUG00000018873 Mustela putorius furo ENSMPUG00000018873 I 0.000
ENSNLEG00000019305 Nomascus leucogenys ENSNLEG00000019305 I 0.000
ENSOARG00000002572 Ovis aries ENSOARG00000002572 I 0.000
ENSONIG00000017079 Oreochromis niloticus ENSONIG00000017079 I 0.000
ENSONIG00000020727 Oreochromis niloticus ENSONIG00000020727 I 0.000
ENSP00000356708 Macaca fascicularis ENSP00000356708 I 0.000
ENSP00000356708-D1 Bos grunniens ENSP00000356708-D1 I 0.000
ENSPANG00000006465 Papio anubis ENSPANG00000006465 I 0.000
ENSPANG00000007664 Papio anubis ENSPANG00000007664 I 0.000
ENSPFOG00000004604 Poecilia formosa ENSPFOG00000004604 I 0.000
ENSPFOG00000015805 Poecilia formosa ENSPFOG00000015805 I 0.000
ENSPFOG00000019968 Poecilia formosa ENSPFOG00000019968 I 0.000
ENSPPYG00000011369 Pongo abelii ENSPPYG00000011369 I 0.000
ENSPPYG00000017041 Pongo abelii ENSPPYG00000017041 I 0.000
ENSPSIG00000001778 Pelodiscus sinensis ENSPSIG00000001778 I 0.000
ENSPSIG00000001988 Pelodiscus sinensis ENSPSIG00000001988 I 0.000
ENSSHAG00000007183 Sarcophilus harrisii ENSSHAG00000007183 I 0.000
ENSSTOG00000020214 Ictidomys tridecemlineatus ENSSTOG00000020214 I 0.000
ENSSTOG00000020899 Ictidomys tridecemlineatus ENSSTOG00000020899 I 0.000
ENSXMAG00000001116 Xiphophorus maculatus ENSXMAG00000001116 I 0.000
ENSXMAG00000018245 Xiphophorus maculatus ENSXMAG00000018245 I 0.000
Gfo_R003786 Geospiza fortis Gfo_R003786 I 0.000
LotgiG70673 Lottia gigantea LotgiG70673 I 0.000
Myotis_brandtii_OLIG3_10035715 Myotis brandtii Myotis_brandtii_OLIG3_10035715 I 0.000
Ocbimv22001042m.g Octopus bimaculoides Ocbimv22001042m.g I 0.000
Ogr17936 Ophisaurus gracilis Ogr17936 I 0.000
OLIG2 Canis familiaris ENSCAFG00000028529 I 0.000
OLIG2 Callithrix jacchus ENSCJAG00000009439 I 0.000
OLIG2 Cavia porcellus ENSCPOG00000011590 I 0.000
olig2 Danio rerio ENSDARG00000040946 I 0.000
OLIG2 Dasypus novemcinctus ENSDNOG00000047420 I 0.000
OLIG2 Homo sapiens ENSG00000205927 D 0.000
olig2 Gasterosteus aculeatus ENSGACG00000002152 I 0.000
OLIG2 Gorilla gorilla ENSGGOG00000008780 I 0.000
OLIG2 Loxodonta africana ENSLAFG00000028347 I 0.000
OLIG2 Macaca mulatta ENSMMUG00000017652 I 0.000
OLIG2 Monodelphis domestica ENSMODG00000025338 I 0.000
Olig2 Mus musculus ENSMUSG00000039830 D 0.000
OLIG2 Otolemur garnettii ENSOGAG00000026818 I 0.000
olig2 Oryzias latipes ENSORLG00000010211 I 0.000
OLIG2 Procavia capensis ENSPCAG00000005657 I 0.000
OLIG2 Pan troglodytes ENSPTRG00000013863 I 0.000
Olig2 Rattus norvegicus ENSRNOG00000028658 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000000234 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000003641 I 0.000
olig2 Takifugu rubripes ENSTRUG00000014944 I 0.000
OLIG3 Canis familiaris ENSCAFG00000000265 I 0.000
OLIG3 Choloepus hoffmanni ENSCHOG00000005165 I 0.000
OLIG3 Cavia porcellus ENSCPOG00000007516 I 0.000
OLIG3 Dasypus novemcinctus ENSDNOG00000042405 I 0.000
Olig3 Dipodomys ordii ENSDORG00000013033 I 0.000
OLIG3 Echinops telfairi ENSETEG00000004562 I 0.000
OLIG3 Felis catus ENSFCAG00000030246 I 0.000
OLIG3 Homo sapiens ENSG00000177468 D 0.000
OLIG3 Gasterosteus aculeatus ENSGACG00000010412 I 0.000
OLIG3 Gallus gallus ENSGALG00000013862 I 0.000
OLIG3 Gorilla gorilla ENSGGOG00000001516 I 0.000
OLIG3 Loxodonta africana ENSLAFG00000005655 I 0.000
OLIG3 Myotis lucifugus ENSMLUG00000026705 I 0.000
OLIG3 Monodelphis domestica ENSMODG00000017418 I 0.000
Olig3 Mus musculus ENSMUSG00000045591 D 0.000
OLIG3 Ornithorhynchus anatinus ENSOANG00000014796 I 0.000
OLIG3 Oryctolagus cuniculus ENSOCUG00000017289 I 0.000
OLIG3 Otolemur garnettii ENSOGAG00000011977 I 0.000
OLIG3 Ochotona princeps ENSOPRG00000003267 I 0.000
OLIG3 Procavia capensis ENSPCAG00000002488 I 0.000
OLIG3 Pan troglodytes ENSPTRG00000018643 I 0.000
Olig3 Rattus norvegicus ENSRNOG00000012057 I 0.000
OLIG3 Sus scrofa ENSSSCG00000004155 I 0.000
OLIG3 Tupaia belangeri ENSTBEG00000014468 I 0.000
OLIG3 Taeniopygia guttata ENSTGUG00000010892 I 0.000
OLIG3 Tetraodon nigroviridis ENSTNIG00000017004 I 0.000
olig3 Xenopus tropicalis XB-GENE-919789 I 0.000
Pvit_10685 Pogona vitticeps Pvit_10685 I 0.000
Pvit_17282 Pogona vitticeps Pvit_17282 I 0.000
Sakowv30018772m.g Saccoglossus kowalevskii Sakowv30018772m.g I 0.000
XP_002938491 Xenopus tropicalis XP_002938491 I 0.000