Bra001643 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001643 T267702_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR1
M02296_2.00 		Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN		 PBM
Weirauch et al.(2014)
pTH8257 		0.909 1.000
ARR1
M02297_2.00 		Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN		 PBM
Weirauch et al.(2014)
pTH8590 		0.876 0.957
e_gw1.362.4.1
M02341_2.00 		Physcomitrella patens
NNNRDATCNN
NNGATHYNNN		 PBM
Weirauch et al.(2014)
pTH8461 		0.765 0.894
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00 		Ostreococcus tauri
NNNDATCN
NGATHNNN		 PBM
Weirauch et al.(2014)
pTH9644 		0.705 0.830
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.701 0.830
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.701 0.830
ARR10
M02702_2.00 		Arabidopsis thaliana
AGATHYKN
NMRDATCT		 SELEX
Mathelier et al.(2014)
MA0121.1 		0.684 0.766
ARR10
M11045_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ARR10_01 		0.684 0.766
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.674 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001643.1-P Myb 236 286

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL002896 Aedes aegypti AAEL002896 N
AATE010215 Anopheles atroparvus AATE010215 N
ACHR008416 Anopheles christyi ACHR008416 N
ACUA012425 Anopheles culicifacies ACUA012425 N
AFAF001369 Anopheles farauti AFAF001369 N
AFUN007598 Anopheles funestus AFUN007598 N
AMAM008031 Anopheles maculatus AMAM008031 N
AMEC022527 Anopheles melas AMEC022527 N
AMEM004138 Anopheles merus AMEM004138 N
AMIN005595 Anopheles minimus AMIN005595 N
ASIS022335 Anopheles sinensis ASIS022335 N
CPIJ016582 Culex quinquefasciatus CPIJ016582 N
CpipJ_CPIJ016582 Culex pipiens CpipJ_CPIJ016582 N
LLOJ003674 Lutzomyia longipalpis LLOJ003674 N
MDOA015064 Musca domestica MDOA015064 N
TC010323 Tribolium castaneum TC010323 N