Bra004503 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra004503 T267745_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.903 0.957
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.903 0.957
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.870 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.842 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.842 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.751 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.751 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.751 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.751 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.751 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.738 0.783
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.738 0.783
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.738 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.736 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004503.1-P Myb 24 69

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_05375 Cladophialophora psammophila A1O5_05375 N 0.000
A1Q1_01025 Trichosporon asahii A1Q1_01025 N 0.000
ANIA_00094 Aspergillus nidulans CADANIAG00002656 N 0.000
AUEXF2481DRAFT_41260 Aureobasidium subglaciale AUEXF2481DRAFT_41260 N 0.000
CGGC5_10999 Colletotrichum gloeosporioides CGGC5_10999 N 0.000
CH063_11411 Colletotrichum higginsianum CH063_11411 N 0.000
Cob_00662 Colletotrichum orbiculare Cob_00662 N 0.000
CSUB01_08092 Colletotrichum sublineola CSUB01_08092 N 0.000
e_gw1.9.18.1 Nectria haematococca e_gw1.9.18.1 N 0.000
F503_06049 Ophiostoma piceae uamh F503_06049 I 0.000
GGTG_12739 Gaeumannomyces graminis GGTG_12739 N 0.000
GMDG_04760 Pseudogymnoascus destructans GMDG_04760 I 0.000
M437DRAFT_57903 Aureobasidium melanogenum M437DRAFT_57903 N 0.000
M438DRAFT_314995 Aureobasidium pullulans M438DRAFT_314995 N 0.000
NechaG45265 Fusarium solani NechaG45265 N 0.000
VDAG_07398 Verticillium dahliae VDAG_07398 N 0.000
VDBG_09240 Verticillium alfalfae VDBG_09240 N 0.000
VDBG_09240 Verticillium albo atrum VDBG_09240 N 0.000
Z519_08249 Cladophialophora bantiana Z519_08249 N 0.000