Bra029033 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029033 T268028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.879 0.978
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.879 0.978
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.719 0.817
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.696 0.860
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.693 0.828
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.693 0.828
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.693 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.693 0.785
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.689 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.689 0.753
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.687 0.785
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.663 0.763
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.663 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029033.1-P Myb 14 61
Bra029033.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

446 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_06648 Capronia epimyces A1O3_06648 N
ACLA_008320 Aspergillus clavatus CADACLAG00000505 N
AUEXF2481DRAFT_530826 Aureobasidium subglaciale AUEXF2481DRAFT_530826 N
CADANGAG00009682 Aspergillus niger CADANGAG00009682 N
CGGC5_4445 Colletotrichum gloeosporioides CGGC5_4445 N
estExt_fgenesh1_pm.C_sca_39_chr11_5_00049 Nectria haematococca estExt_fgenesh1_pm.C_sca_39_chr11_5_00049 N
FGRRES_03322 Fusarium graminearum FGRRES_03322 N
NechaG105641 Fusarium solani NechaG105641 N
PMAA_026980 Talaromyces marneffei PMAA_026980 N
PMAA_026980 Penicillium marneffei PMAA_026980 N
PMAA_051670 Penicillium marneffei PMAA_051670 N
PMAA_051670 Talaromyces marneffei PMAA_051670 N
PV04_09739 Capronia semiimmersa PV04_09739 N
PV06_03957 Exophiala oligosperma PV06_03957 N
PV07_05801 Cladophialophora immunda PV07_05801 N
S40288_04714 Stachybotrys chartarum S40288_04714 N
SEPMUDRAFT_57525 Sphaerulina musiva SEPMUDRAFT_57525 N
VDAG_09064 Verticillium dahliae VDAG_09064 N