Bra037837 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra037837 T268128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.860 0.957
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.860 0.957
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.860 0.957
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.860 0.957
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.706 0.870
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.702 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037837.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG009080.1 Alligator sinensis Alligator_sinensis_CCG009080.1 N
Cmyd_10016724 Chelonia mydas Cmyd_10016724 N
ENSACAG00000024733 Anolis carolinensis ENSACAG00000024733 N
ENSAMEG00000018149 Ailuropoda melanoleuca ENSAMEG00000018149 N
ENSAPLG00000007392 Anas platyrhynchos ENSAPLG00000007392 N
ENSCAFG00000032382 Canis familiaris ENSCAFG00000032382 N
ENSCJAG00000012840 Callithrix jacchus ENSCJAG00000012840 N
ENSCSAG00000003107 Chlorocebus sabaeus ENSCSAG00000003107 N
ENSDNOG00000040837 Dasypus novemcinctus ENSDNOG00000040837 N
ENSDORG00000008940 Dipodomys ordii ENSDORG00000008940 N
ENSFALG00000006492 Ficedula albicollis ENSFALG00000006492 N
ENSMLUG00000029422 Myotis lucifugus ENSMLUG00000029422 N
ENSMPUG00000008220 Mustela putorius furo ENSMPUG00000008220 N
ENSP00000326630-D1 Bos grunniens ENSP00000326630-D1 N
ENSPANG00000005497 Papio anubis ENSPANG00000005497 N
ENSPPYG00000007637 Pongo abelii ENSPPYG00000007637 N
ENSSTOG00000027139 Ictidomys tridecemlineatus ENSSTOG00000027139 N
ENSTGUG00000007708 Taeniopygia guttata ENSTGUG00000007708 N
Myotis_brandtii_ZFPM1_10035266 Myotis brandtii Myotis_brandtii_ZFPM1_10035266 N
Ogr16761 Ophisaurus gracilis Ogr16761 N
Pvit_16331 Pogona vitticeps Pvit_16331 N
Zfpm1 Rattus norvegicus ENSRNOG00000043077 N
ZFPM1 Pteropus vampyrus ENSPVAG00000005587 N
ZFPM1 Tursiops truncatus ENSTTRG00000014484 N
ZFPM1 Otolemur garnettii ENSOGAG00000028472 N
Zfpm1 Mus musculus ENSMUSG00000049577 N
ZFPM1 Loxodonta africana ENSLAFG00000013561 N
ZFPM1 Gallus gallus ENSGALG00000006099 N
ZFPM1 Homo sapiens ENSG00000179588 N
ZFPM1 Bos taurus ENSBTAG00000015766 N