ENSPSIG00000011892 (Pelodiscus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ENSPSIG00000011892 T269976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Myb
M00179_2.00 		Mus musculus
HAACGGHHNN
NNDDCCGTTD		 PBM
Badis et al.(2009)
Myb_1047 		0.898 0.986
MYB
M08150_2.00 		Homo sapiens
NNCAACTGHN
NDCAGTTGNN		 ChIP-seq
Mathelier et al.(2014)
MA0100.3 		0.898 0.986
MYB
M09260_2.00 		Homo sapiens
NYAACKGYYDNH
DNHRRCMGTTRN		 Misc
Kulakovskiy et al.(2013)
MYB_HUMAN.H11MO.0.A 		0.898 0.986
Myb
M09261_2.00 		Mus musculus
NYAACKGHHNBN
NVNDDCMGTTRN		 Misc
Kulakovskiy et al.(2013)
MYB_MOUSE.H11MO.0.A 		0.898 0.986
Myb
M09601_2.00 		Mus musculus
YAACBGYC
GRCVGTTR		 Misc
Heinz et al.(2010)
ERMYB-Myb_GSE22095 		0.898 0.986
MYB
M11050_2.00 		Homo sapiens
CMVNCAACBGYCNBYNBV
BVNRVNGRCVGTTGNBKG		 Transfac
Matys et al.(2006)
V$CMYB_01 		0.898 0.986
MYB
M11051_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CMYB_Q5 		0.898 0.986
MYB
M11052_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYB_Q3 		0.898 0.986
MYB
M11053_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYB_Q4 		0.898 0.986
MYB
M11054_2.00 		Homo sapiens
VNNAACKDBB
VVHMGTTNNB		 Transfac
Matys et al.(2006)
V$MYB_Q6 		0.898 0.986
Mybl1
M00180_2.00 		Mus musculus
HAACBGHHN
NDDCVGTTD		 PBM
Badis et al.(2009)
Mybl1_1717 		0.827 0.871
MYBL1
M03349_2.00 		Homo sapiens
BVGTTKAACBGY
RCVGTTMAACBV		 SELEX
Jolma et al.(2013)
MYBL1_1 		0.827 0.871
MYBL1
M03350_2.00 		Homo sapiens
RMVGTTAACGGT
ACCGTTAACBKY		 SELEX
Jolma et al.(2013)
MYBL1_2 		0.827 0.871
MYBL1
M03351_2.00 		Homo sapiens
NHRACCGTTWN
NWAACGGTYDN		 SELEX
Jolma et al.(2013)
MYBL1_3 		0.827 0.871
MYBL1
M03352_2.00 		Homo sapiens
HAACSGHHHHAACBGHC
GDCVGTTDDDDCSGTTD		 SELEX
Jolma et al.(2013)
MYBL1_4 		0.827 0.871
Mybl1
M09262_2.00 		Mus musculus
BBNBYAACBGCCNSB
VSNGGCVGTTRVNVV		 Misc
Kulakovskiy et al.(2013)
MYBA_MOUSE.H11MO.0.C 		0.827 0.871
MYB_AVIMB
M11068_2.00 		Avian myeloblastosis virus
VRYAACKGNH
DNCMGTTRYB		 Transfac
Matys et al.(2006)
V$VMYB_01 		0.689 0.750
MYB_AVIMB
M11069_2.00 		Avian myeloblastosis virus
BVYAACGGH
DCCGTTRBV		 Transfac
Matys et al.(2006)
V$VMYB_02 		0.689 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000013438 Myb 40 86
ENSPSIP00000013438 Myb 92 138
ENSPSIP00000013438 Myb 144 189
ENSPSIP00000013445 Myb 51 97
ENSPSIP00000013445 Myb 103 149
ENSPSIP00000013445 Myb 155 200

Links

Other Myb/SANT family TFs
Other Pelodiscus sinensis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.A01182 Eucalyptus grandis Eucgr.A01182 N
GRMZM2G076602 Zea mays GRMZM2G076602 N
LjSGA_043732.1 Lotus japonicus LjSGA_043732.1 N
MDP0000204900 Malus domestica MDP0000204900 N
MLOC_43041 Hordeum vulgare MLOC_43041 I
MLOC_43575 Hordeum vulgare MLOC_43575 I
MLOC_43830 Hordeum vulgare MLOC_43830 N
MLOC_77763 Hordeum vulgare MLOC_77763 N
OB05G11530 Oryza brachyantha OB05G11530 N
OB07G16010 Oryza brachyantha OB07G16010 N
Pavir.Gb00344 Panicum virgatum Pavir.Gb00344 N
PDK_20s1337001g001 Phoenix dactylifera PDK_20s1337001g001 N
PDK_20s1709981g002 Phoenix dactylifera PDK_20s1709981g002 N
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I
PGSC0003DMG400006604 Solanum tuberosum PGSC0003DMG400006604 N
Traes_2AL_5BA7E2623 Triticum aestivum Traes_2AL_5BA7E2623 N
Traes_5BL_5117B3E2A Triticum aestivum Traes_5BL_5117B3E2A N
Traes_5DL_E88449625 Triticum aestivum Traes_5DL_E88449625 N
TRIUR3_24919 Triticum urartu TRIUR3_24919 N