ATCDC5 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.1__1032__AT1G09770.1 T270721_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 1.000
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 1.000
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.870
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1032__AT1G09770.1 Myb 7 53
fgenesh2_kg.1__1032__AT1G09770.1 Myb 59 103

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA032231 Oryza indica BGIOSGA032231 N
BGIOSGA036980 Oryza indica BGIOSGA036980 N
LPERR10G02920 Leersia perrieri LPERR10G02920 N
OBART10G04050 Oryza barthii OBART10G04050 N
OBART11G02970 Oryza barthii OBART11G02970 N
OGLUM10G03910 Oryza glumaepatula OGLUM10G03910 N
OGLUM11G02610 Oryza glumaepatula OGLUM11G02610 N
OLONG_027283 Oryza longistaminata OLONG_027283 N
OMERI11G02750 Oryza meridionalis OMERI11G02750 N
ONIVA05G14200 Oryza nivara ONIVA05G14200 I
ONIVA06G03680 Oryza nivara ONIVA06G03680 N
OPUNC10G03390 Oryza punctata OPUNC10G03390 N
ORGLA11G0027100 Oryza glaberrima ORGLA11G0027100 N
ORUFI11G02830 Oryza rufipogon ORUFI11G02830 N