TRFL9 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__1313__AT3G12560.1 T270762_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.849 0.979
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.841 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.841 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.831 0.936
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1313__AT3G12560.1 Myb 508 558

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_05514 Capronia coronata A1O1_05514 N
A1O3_04485 Capronia epimyces A1O3_04485 N
A1O3_09130 Capronia epimyces A1O3_09130 N
A1O5_05682 Cladophialophora psammophila A1O5_05682 N
A1O7_02428 Cladophialophora yegresii A1O7_02428 N
A1O9_07253 Exophiala aquamarina A1O9_07253 N
estExt_fgenesh1_pg.C_sca_85_chr13_3_00015 Nectria haematococca estExt_fgenesh1_pg.C_sca_85_chr13_3_00015 N
FFUJ_11668 Fusarium fujikuroi FFUJ_11668 N
fgenesh1_pg.sca_32_chr11_3_0000061 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000061 N
FOXG_12298 Fusarium oxysporum FOXG_12298 N
G647_08938 Cladophialophora carrionii G647_08938 N
HMPREF1120_05306 Exophiala dermatitidis HMPREF1120_05306 N
HMPREF1120_07748 Exophiala dermatitidis HMPREF1120_07748 N
NechaG102190 Fusarium solani NechaG102190 N
NechaG86666 Fusarium solani NechaG86666 N
OIDMADRAFT_117559 Oidiodendron maius OIDMADRAFT_117559 N
Pc21g06560 Penicillium chrysogenum Pc21g06560 N
PCH_Pc21g06560 Penicillium rubens PCH_Pc21g06560 N
PV04_02591 Capronia semiimmersa PV04_02591 N
PV04_08970 Capronia semiimmersa PV04_08970 N
PV05_11665 Exophiala xenobiotica PV05_11665 N
PV06_01117 Exophiala oligosperma PV06_01117 N
PV07_01698 Cladophialophora immunda PV07_01698 N
PV10_03377 Exophiala mesophila PV10_03377 N
SAPIO_CDS0007 Scedosporium apiospermum SAPIO_CDS0007 N
Z517_04340 Fonsecaea pedrosoi Z517_04340 N
Z518_02371 Rhinocladiella mackenziei Z518_02371 N
Z519_11167 Cladophialophora bantiana Z519_11167 N