GRMZM2G029850 (Zea mays)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GRMZM2G029850 T271906_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.794 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.794 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.794 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.794 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.794 0.804
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.776 0.826
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.776 0.826
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.767 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.740 0.761
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.721 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.721 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.680 0.717
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.680 0.717
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.680 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G029850_P02 Myb 41 86

Links

Other Myb/SANT family TFs
Other Zea mays TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_01146 Phytophthora capsici estExt_fgenesh1_kg.C_01146 N
estExt_fgenesh1_kg.C_2070034 Phytophthora capsici estExt_fgenesh1_kg.C_2070034 N
estExt_fgenesh1_pm.C_680840001 Phytophthora capsici estExt_fgenesh1_pm.C_680840001 N
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I
F443_00625 Phytophthora parasitica F443_00625 N
F443_20671 Phytophthora parasitica F443_20671 I
F443_20702 Phytophthora parasitica F443_20702 I
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I
fgenesh_scip_prom.28083.11537 Phytophthora lateralis fgenesh_scip_prom.28083.11537 N
fgenesh_scip_prom.46568.9767 Phytophthora kernoviae fgenesh_scip_prom.46568.9767 N
fgenesh_scip_prom.46568.9768 Phytophthora kernoviae fgenesh_scip_prom.46568.9768 N
HpaG809807 Hyaloperonospora arabidopsidis HpaG809807 N
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I
maker-pag1_scaffold_266-snap-gene-0.7 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.7 N
maker-par_contig_2748-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_2748-snap-gene-0.2 I
maker-pir_contig_516-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.3 N
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I
maker-pve_contig_506-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_506-fgenesh-gene-0.3 N
maker-pve_contig_734-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_734-fgenesh-gene-0.2 N
Phyra78879 Phytophthora ramorum Phyra78879 N
Phyra80922 Phytophthora ramorum Phyra80922 N
Phyra80925 Phytophthora ramorum Phyra80925 N
Phyra85497 Phytophthora ramorum Phyra85497 N
Physo132945 Phytophthora sojae Physo132945 I
Physo132965 Phytophthora sojae Physo132965 N
Physo138282 Phytophthora sojae Physo138282 N
PITG_10310 Phytophthora infestans PITG_10310 N
PITG_14400 Phytophthora infestans PITG_14400 I
PYU1_G002835 Pythium ultimum PYU1_G002835 I
PYU1_G002844 Pythium ultimum PYU1_G002844 N
PYU1_G002847 Pythium ultimum PYU1_G002847 N
PYU1_G002849 Pythium ultimum PYU1_G002849 I
PYU1_G003099 Pythium ultimum PYU1_G003099 N