POPTR_0013s06320 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0013s06320 T278437_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB105
M07031_2.00 		Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB105_col_a 		0.818 0.914
MYB105
M07032_2.00 		Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN		 Dap-seq
OMalley et al.(2016)
MYB105_colamp_a 		0.818 0.914
MYB56
M07130_2.00 		Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH		 Dap-seq
OMalley et al.(2016)
MYB56_col_a 		0.816 0.871
MYB56
M07131_2.00 		Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH		 Dap-seq
OMalley et al.(2016)
MYB56_colamp_a 		0.816 0.871
MYB52
M00871_2.00 		Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB52 		0.766 0.796
MYB52
M07007_2.00 		Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB52_col_a 		0.766 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s06320.1 Myb 115 161
POPTR_0013s06320.1 Myb 167 212

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

385 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01134 Aspergillus nidulans CADANIAG00001495 N
CERSUDRAFT_119740 Ceriporiopsis subvermispora CERSUDRAFT_119740 N
EPUS_00435 Endocarpon pusillum EPUS_00435 N
estExt_fgenesh3_kg.C_170048 Heterobasidion annosum estExt_fgenesh3_kg.C_170048 N
estExt_fgeneshMC_pg.C_50901 Mucor circinelloides estExt_fgeneshMC_pg.C_50901 N
estExt_fgeneshPB_pg.C_390043 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_390043 N
FIBRA_02145 Fibroporia radiculosa FIBRA_02145 N
GLOINDRAFT_184871 Rhizophagus irregularis GLOINDRAFT_184871 N
GLOTRDRAFT_117339 Gloeophyllum trabeum GLOTRDRAFT_117339 N
HETIRDRAFT_439816 Heterobasidion irregulare HETIRDRAFT_439816 N
HYDPIDRAFT_117261 Hydnomerulius pinastri HYDPIDRAFT_117261 N
KUCA_T00004588001 Kuraishia capsulata KUCA_T00004588001 N
PAXRUDRAFT_153943 Paxillus rubicundulus PAXRUDRAFT_153943 N
PV06_01512 Exophiala oligosperma PV06_01512 N
SCHCODRAFT_269951 Schizophyllum commune SCHCODRAFT_269951 N
SJAG_02048 Schizosaccharomyces japonicus SJAG_02048 N
WALSEDRAFT_28433 Wallemia sebi WALSEDRAFT_28433 N
WALSEDRAFT_58028 Wallemia sebi WALSEDRAFT_58028 N